# This file created by conda-build 3.18.9
# meta.yaml template originally from:
# /opt/recipe, last modified Tue Aug  6 12:12:15 2019
# ------------------------------------------------

package:
    name: bioconductor-seqgsea
    version: 1.24.0
source:
    md5: 99baf889467af15810cf88111873c40f
    url:
        - https://bioarchive.galaxyproject.org/SeqGSEA_1.24.0.tar.gz
        - https://bioconductor.org/packages/3.9/bioc/src/contrib/SeqGSEA_1.24.0.tar.gz
        - https://depot.galaxyproject.org/software/bioconductor-seqgsea/bioconductor-seqgsea_1.24.0_src_all.tar.gz
build:
    noarch: generic
    number: '1'
    rpaths:
        - lib/
        - lib/R/lib/
    string: r36_1
requirements:
    host:
        - _libgcc_mutex 0.1 main
        - _r-mutex 1.0.1 anacondar_1
        - binutils_impl_linux-64 2.31.1 h6176602_1
        - binutils_linux-64 2.31.1 h6176602_7
        - bioconductor-annotate 1.62.0 r36_1
        - bioconductor-annotationdbi 1.46.0 r36_1
        - bioconductor-biobase 2.44.0 r36h516909a_1
        - bioconductor-biocgenerics 0.30.0 r36_1
        - bioconductor-biomart 2.40.3 r36_0
        - bioconductor-deseq 1.36.0 r36h516909a_1
        - bioconductor-genefilter 1.66.0 r36hc99cbb1_1
        - bioconductor-geneplotter 1.62.0 r36_1
        - bioconductor-iranges 2.18.1 r36h516909a_0
        - bioconductor-s4vectors 0.22.0 r36h516909a_1
        - bwidget 1.9.11 0
        - bzip2 1.0.8 h516909a_0
        - ca-certificates 2019.6.16 hecc5488_0
        - cairo 1.16.0 hfb77d84_1002
        - curl 7.65.3 hf8cf82a_0
        - fontconfig 2.13.1 h86ecdb6_1001
        - freetype 2.10.0 he983fc9_0
        - fribidi 1.0.5 h516909a_1002
        - gcc_impl_linux-64 7.3.0 habb00fd_1
        - gcc_linux-64 7.3.0 h553295d_7
        - gettext 0.19.8.1 hc5be6a0_1002
        - gfortran_impl_linux-64 7.3.0 hdf63c60_1
        - gfortran_linux-64 7.3.0 h553295d_7
        - glib 2.58.3 h6f030ca_1002
        - graphite2 1.3.13 hf484d3e_1000
        - gsl 2.5 h294904e_0
        - gxx_impl_linux-64 7.3.0 hdf63c60_1
        - gxx_linux-64 7.3.0 h553295d_7
        - harfbuzz 2.4.0 h9f30f68_2
        - icu 64.2 he1b5a44_0
        - jpeg 9c h14c3975_1001
        - krb5 1.16.3 h05b26f9_1001
        - libblas 3.8.0 11_openblas
        - libcblas 3.8.0 11_openblas
        - libcurl 7.65.3 hda55be3_0
        - libedit 3.1.20170329 hf8c457e_1001
        - libffi 3.2.1 he1b5a44_1006
        - libgcc-ng 9.1.0 hdf63c60_0
        - libgfortran-ng 7.3.0 hdf63c60_0
        - libiconv 1.15 h516909a_1005
        - liblapack 3.8.0 11_openblas
        - libopenblas 0.3.6 h6e990d7_6
        - libpng 1.6.37 hed695b0_0
        - libssh2 1.8.2 h22169c7_2
        - libstdcxx-ng 9.1.0 hdf63c60_0
        - libtiff 4.0.10 h57b8799_1003
        - libuuid 2.32.1 h14c3975_1000
        - libxcb 1.13 h14c3975_1002
        - libxml2 2.9.9 hee79883_2
        - lz4-c 1.8.3 he1b5a44_1001
        - make 4.2.1 h14c3975_2004
        - ncurses 6.1 hf484d3e_1002
        - openssl 1.1.1c h516909a_0
        - pango 1.42.4 he7ab937_0
        - pcre 8.41 hf484d3e_1003
        - pixman 0.38.0 h516909a_1003
        - pthread-stubs 0.4 h14c3975_1001
        - r-askpass 1.1 r36hcdcec82_1
        - r-assertthat 0.2.1 r36h6115d3f_1
        - r-backports 1.1.4 r36hcdcec82_1
        - r-base 3.6.1 h6e652e1_3
        - r-bh 1.69.0_1 r36h6115d3f_1
        - r-bit 1.1_14 r36hcdcec82_1
        - r-bit64 0.9_7 r36hcdcec82_1001
        - r-bitops 1.0_6 r36hcdcec82_1003
        - r-blob 1.2.0 r36_1
        - r-codetools 0.2_16 r36h6115d3f_1001
        - r-crayon 1.3.4 r36h6115d3f_1002
        - r-curl 4.0 r36hcdcec82_0
        - r-dbi 1.0.0 r36h6115d3f_1002
        - r-digest 0.6.20 r36h0357c0b_1
        - r-doparallel 1.0.15 r36h6115d3f_0
        - r-ellipsis 0.2.0.1 r36hcdcec82_1
        - r-foreach 1.4.7 r36h6115d3f_0
        - r-glue 1.3.1 r36hcdcec82_1
        - r-hms 0.5.0 r36h6115d3f_1
        - r-httr 1.4.1 r36h6115d3f_0
        - r-iterators 1.0.12 r36h6115d3f_0
        - r-jsonlite 1.6 r36hcdcec82_1001
        - r-lattice 0.20_38 r36hcdcec82_1002
        - r-locfit 1.5_9.1 r36h516909a_1004
        - r-magrittr 1.5 r36h6115d3f_1002
        - r-mass 7.3_51.4 r36hcdcec82_1
        - r-matrix 1.2_17 r36hcdcec82_1
        - r-memoise 1.1.0 r36h6115d3f_1002
        - r-mime 0.7 r36hcdcec82_1
        - r-openssl 1.4 r36h9c8475f_1
        - r-pkgconfig 2.0.2 r36h6115d3f_1002
        - r-plogr 0.2.0 r36h6115d3f_1002
        - r-prettyunits 1.0.2 r36h6115d3f_1002
        - r-progress 1.2.2 r36h6115d3f_1
        - r-r6 2.4.0 r36h6115d3f_2
        - r-rcolorbrewer 1.1_2 r36h6115d3f_1002
        - r-rcpp 1.0.2 r36h0357c0b_0
        - r-rcurl 1.95_4.12 r36hcdcec82_1
        - r-rlang 0.4.0 r36hcdcec82_1
        - r-rsqlite 2.1.2 r36h0357c0b_0
        - r-stringi 1.4.3 r36h0e574ca_3
        - r-stringr 1.4.0 r36h6115d3f_1
        - r-survival 2.44_1.1 r36hcdcec82_1
        - r-sys 3.2 r36hcdcec82_1
        - r-vctrs 0.2.0 r36hcdcec82_1
        - r-xml 3.98_1.20 r36hcdcec82_1
        - r-xtable 1.8_4 r36h6115d3f_2
        - r-zeallot 0.1.0 r36h6115d3f_1001
        - readline 8.0 hf8c457e_0
        - sed 4.7 h1bed415_1000
        - tk 8.6.9 hed695b0_1002
        - tktable 2.10 h555a92e_1
        - xorg-kbproto 1.0.7 h14c3975_1002
        - xorg-libice 1.0.10 h516909a_0
        - xorg-libsm 1.2.3 h84519dc_1000
        - xorg-libx11 1.6.8 h516909a_0
        - xorg-libxau 1.0.9 h14c3975_0
        - xorg-libxdmcp 1.1.3 h516909a_0
        - xorg-libxext 1.3.4 h516909a_0
        - xorg-libxrender 0.9.10 h516909a_1002
        - xorg-renderproto 0.11.1 h14c3975_1002
        - xorg-xextproto 7.3.0 h14c3975_1002
        - xorg-xproto 7.0.31 h14c3975_1007
        - xz 5.2.4 h14c3975_1001
        - zlib 1.2.11 h516909a_1005
        - zstd 1.4.0 h3b9ef0a_0
    run:
        - bioconductor-biobase >=2.44.0,<2.45.0
        - bioconductor-biomart >=2.40.0,<2.41.0
        - bioconductor-deseq >=1.36.0,<1.37.0
        - r-base >=3.6,<3.7.0a0
        - r-doparallel
test:
    commands:
        - $R -e "library('SeqGSEA')"
about:
    home: https://bioconductor.org/packages/3.9/bioc/html/SeqGSEA.html
    license: GPL (>= 3)
    summary: The package generally provides methods for gene set enrichment analysis
        of high-throughput RNA-Seq data by integrating differential expression and
        splicing. It uses negative binomial distribution to model read count data,
        which accounts for sequencing biases and biological variation. Based on permutation
        tests, statistical significance can also be achieved regarding each gene's
        differential expression and splicing, respectively.
extra:
    copy_test_source_files: true
    final: true
    identifiers:
        - biotools:seqgsea
