# Generated by roxygen2: do not edit by hand

export(collate_clusters)
export(collate_seqArchR_result)
export(get_clBasVec)
export(get_clBasVec_k)
export(get_clBasVec_m)
export(get_one_hot_encoded_seqs)
export(get_seqClLab)
export(get_seqs_clust_list)
export(make_PWMs)
export(plot_arch_for_clusters)
export(plot_ggseqlogo_of_seqs)
export(prepare_data_from_FASTA)
export(seqArchR)
export(seqs_str)
export(set_config)
export(viz_bas_vec)
export(viz_pwm)
export(viz_seqs_acgt_mat)
importFrom(BiocParallel,MulticoreParam)
importFrom(BiocParallel,SerialParam)
importFrom(BiocParallel,SnowParam)
importFrom(BiocParallel,bplapply)
importFrom(BiocParallel,bpstart)
importFrom(BiocParallel,bpstop)
importFrom(BiocParallel,multicoreWorkers)
importFrom(Biostrings,DNAStringSet)
importFrom(Biostrings,DNA_BASES)
importFrom(Biostrings,width)
importFrom(Matrix,Matrix)
importFrom(cli,cli_alert_info)
importFrom(cli,cli_alert_success)
importFrom(cli,cli_alert_warning)
importFrom(cli,cli_h1)
importFrom(cli,cli_h2)
importFrom(cli,cli_rule)
importFrom(ggplot2,aes)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_text)
importFrom(ggplot2,expansion)
importFrom(ggplot2,geom_tile)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggsave)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,margin)
importFrom(ggplot2,rel)
importFrom(ggplot2,scale_fill_gradient2)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,theme_linedraw)
importFrom(ggplot2,xlab)
importFrom(ggseqlogo,geom_logo)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(grDevices,png)
importFrom(graphics,axis)
importFrom(graphics,image)
importFrom(graphics,legend)
importFrom(graphics,par)
importFrom(methods,is)
importFrom(prettyunits,pretty_dt)
importFrom(reshape2,melt)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(utils,capture.output)
importFrom(utils,tail)
