# a novel tool for functional gene-set (or termed as pathway) analysis of next-generation sequencing data

## Documentation for package ‘seq2pathway’ version 1.22.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

addDescription | Retrieve "gene description" attributes for gene symbol.
Chipseq_Peak_demo | chip seq loci data example
dat_chip | chip seq data example
dat_RNA | RNA sequence data example
FisherTest_GO_BP_MF_CC | A wrapper function to perform the Fisher's exact test, using GO-defined genesets.
FisherTest_MsigDB | A wrapper function to perform conditional Fisher's exact test, using custom-defined genesets.
gene2pathway_test | A wrapper function to perform gene2pathway test.
GRanges_demo | loci information with GRanges format
plotTop10 | A wrapper function to plot top10 test results.
runseq2gene | R wrapped python function to map genomic regions on the sequence-level to genes.
runseq2pathway | An function to perform the runseq2pathway algorithm(s).