SELEX-package           SELEX Package
selex.affinities        Construct a K-mer affinity table
selex.config            Set SELEX system parameters
selex.countSummary      Summarize available K-mer count tables
selex.counts            Construct or retrieve a K-mer count table
selex.defineSample      Define annotation for an individual sample
selex.exampledata       Extract example data files
selex.fastqPSFM         Construct a diagnostic PSFM for a FASTQ file
selex.getAttributes     Display sample handle properties
selex.getRound0         Obtain round zero sample handle
selex.getSeqfilter      Display sequence filter attributes
selex.infogain          Compute or retrieve information gain between
                        rounds
selex.infogainSummary   Summarize available information gain values
selex.jvmStatus         Display current JVM memory usage
selex.kmax              Calculate kmax for a dataset
selex.kmerPSFM          Construct a PSFM from a K-mer table
selex.loadAnnotation    Load a sample annotation file
selex.mm                Build or retrieve a Markov model
selex.mmProb            Compute prior probability of sequence using
                        Markov model
selex.mmSummary         Summarize Markov model properties
selex.revcomp           Create forward-reverse complement data pairs
selex.run               Run a standard SELEX analysis
selex.sample            Create a sample handle
selex.samplePSFM        Construct a diagnostic PSFM for a FASTQ file
selex.sampleSummary     Show samples visible to the current SELEX
                        session
selex.saveAnnotation    Save sample annotations to file
selex.seqfilter         Create a sequence filter
selex.setwd             Set or change the working directory
selex.split             Randomly split a dataset
selex.summary           Display all count table, Markov model, and
                        information gain summaries
