Package: scviR
Date: 2023-03-07
Title: experimental inferface from R to scvi-tools
Version: 1.0.0
Authors@R: 
    c(person(
        "Vincent", "Carey", role = c("aut", "cre"),
        email = "stvjc@channing.harvard.edu",
        comment = c(ORCID = "0000-0003-4046-0063")
     )
    )
Description: This package defines interfaces from R to scvi-tools.  A
	vignette works through the totalVI tutorial for analyzing CITE-seq
	data.  Another vignette compares outputs of Chapter 12 of the
	OSCA book with analogous outputs based on totalVI quantifications.
	Future work will address other components of scvi-tools, with a 
	focus on building understanding of probabilistic methods based
	on variational autoencoders.
License: Artistic-2.0
Encoding: UTF-8
Depends: R (>= 4.3), basilisk, shiny, SingleCellExperiment
Imports: reticulate, BiocFileCache, utils, pheatmap,
        SummarizedExperiment, S4Vectors, limma, scater
Suggests: knitr, testthat, reshape2, ggplot2, rhdf5, BiocStyle
VignetteBuilder: knitr
biocViews: Infrastructure, SingleCell, DataImport
RoxygenNote: 7.2.3
URL: https://github.com/vjcitn/scviR
BugReports: https://github.com/vjcitn/scviR/issues
git_url: https://git.bioconductor.org/packages/scviR
git_branch: RELEASE_3_17
git_last_commit: a9ef6e7
git_last_commit_date: 2023-04-25
Date/Publication: 2023-04-25
NeedsCompilation: no
Packaged: 2023-04-25 22:49:18 UTC; biocbuild
Author: Vincent Carey [aut, cre] (<https://orcid.org/0000-0003-4046-0063>)
Maintainer: Vincent Carey <stvjc@channing.harvard.edu>
Built: R 4.3.1; ; 2023-07-16 01:45:46 UTC; unix
