{% set version = "1.12.0" %}
{% set name = "scTreeViz" %}
{% set bioc = "3.20" %}

about:
  description: scTreeViz provides classes to support interactive data aggregation and visualization of single cell RNA-seq datasets with hierarchies for e.g. cell clusters at different resolutions. The `TreeIndex` class provides methods to manage hierarchy and split the tree at a given resolution or across resolutions. The `TreeViz` class extends `SummarizedExperiment` and can performs quick aggregations on the count matrix defined by clusters.
  home: https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html
  license: Artistic-2.0
  summary: R/Bioconductor package to interactively explore and visualize single cell RNA-seq datasets with hierarhical annotations

build:
  noarch: generic
  number: 0
  rpaths:
    - lib/R/lib/
    - lib/
  run_exports: '{{ pin_subpackage("bioconductor-sctreeviz", max_pin="x.x") }}'

package:
  name: bioconductor-{{ name|lower }}
  version: '{{ version }}'

# Suggests: knitr, BiocStyle, testthat, SC3, scRNAseq, rmarkdown, msd16s, metagenomeSeq, epivizrStandalone, GenomeInfoDb
requirements:

  host:
    - bioconductor-epivizr >=2.36.0,<2.37.0
    - bioconductor-epivizrdata >=1.34.0,<1.35.0
    - bioconductor-epivizrserver >=1.34.0,<1.35.0
    - bioconductor-s4vectors >=0.44.0,<0.45.0
    - bioconductor-scater >=1.34.0,<1.35.0
    - bioconductor-scran >=1.34.0,<1.35.0
    - bioconductor-singlecellexperiment >=1.28.0,<1.29.0
    - bioconductor-summarizedexperiment >=1.36.0,<1.37.0
    - r-base
    - r-clustree
    - r-data.table
    - r-digest
    - r-ggplot2
    - r-ggraph
    - r-httr
    - r-igraph
    - r-matrix
    - r-rtsne
    - r-seurat
    - r-sys

  run:
    - bioconductor-epivizr >=2.36.0,<2.37.0
    - bioconductor-epivizrdata >=1.34.0,<1.35.0
    - bioconductor-epivizrserver >=1.34.0,<1.35.0
    - bioconductor-s4vectors >=0.44.0,<0.45.0
    - bioconductor-scater >=1.34.0,<1.35.0
    - bioconductor-scran >=1.34.0,<1.35.0
    - bioconductor-singlecellexperiment >=1.28.0,<1.29.0
    - bioconductor-summarizedexperiment >=1.36.0,<1.37.0
    - r-base
    - r-clustree
    - r-data.table
    - r-digest
    - r-ggplot2
    - r-ggraph
    - r-httr
    - r-igraph
    - r-matrix
    - r-rtsne
    - r-seurat
    - r-sys

source:
  md5: 8c96789f4dd4d0338e36fa08172d47d1
  url:
    - https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz
    - https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz
    - https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz
    - https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz

test:
  commands:
    - $R -e "library('{{ name }}')"

