# Detection of cell-cell interaction from single-cell RNA-seq dataset by tensor decomposition

## Documentation for package ‘scTensor’ version 2.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

scTensor-package | Detection of cell-cell interaction from single-cell RNA-seq dataset by tensor decomposition
CCSParams-class | Class "CCSParams"
cellCellDecomp | Performing scTensor
cellCellDecomp-method | Performing scTensor
cellCellRanks | Rank estimation of the CCI-tensor
cellCellRanks-method | Rank estimation of the CCI-tensor
cellCellReport | HTML report of the result of scTensor
cellCellReport-method | HTML report of the result of scTensor
cellCellSetting | Parameter setting for scTensor
cellCellSetting-method | Parameter setting for scTensor
cellCellSimulate | Parameter Simulate for scTensor
cellCellSimulate-method | Parameter Simulate for scTensor
convertToNCBIGeneID | ID conversion function to create the input matrix for scTensor
GermMale | The matrix which is used as test data of scTensor.
getParam | Get a parameter
getParam-method | Get a parameter
labelGermMale | The vector contains the celltype information and color scheme of GermMale
m | The gene-wise mean vector of Quartz-Seq data.
newCCSParams | New Params
scTensor | Detection of cell-cell interaction from single-cell RNA-seq dataset by tensor decomposition
setParam | Set a parameter
setParam-method | Set a parameter
setParam<- | Set a parameter
setParam<--method | Set a parameter
tsneGermMale | The result of Rtsne against GermMale
v | The gene-wise variance vector of Quartz-Seq data.