# 1.2.4

* Added a check in tenxBamqc to check the validity of input chemistry (validCb)

# 1.2.1

* Update vignette to show how bamExample is generated

# 1.1.6

* Fix countUMI gene_biotype bug

# 1.1.5

* Add messages reading GTF file
* check gene_biotype column in GTF file before calculating the protein coding genes and counts

# 1.1.4

* Removed features arg in .getGeneAnnotation

# 1.1.3

* Replaced refGenome package dependency with rtracklayer
* Hide Rsubread alignment messages when verbose == FALSE
* Removed features arg in .getGeneAnnotation

# 1.0.2

* Update bug reports URL.

# 0.99.39

* Removed tenxBamqcplot function. Codes merged to qcplots function instead.

# 0.99.38

* Add option to plot only filtered cells in tenxBamqcplot

# 0.99.37

* Throw error if barcode input is not right

# 0.99.36

* Fix a bug where MT reads are not identified.
* Add ERCC to rowData of sce object.
* Change plot style. Add minor log ticks

# 0.99.35

* Add QC visualization functions for 10X BAM files

# 0.99.11

* LazyData: true

# 0.99.10

* cores = 1 in vigentte

# 0.99.9

* Version bump. Add vignette pdf

# 0.99.8

* Remove LazyData:true

* Add NEWS

* Add \dontrun{} to some examples. version bump

* Update DESCRIPTION

* add data() to internal variables
