alignRsubread           A wrapper to 'Rsubread' read alignment function
                        'align'
bamExample              Example GAlignments Object
barcodeExample          A vector of example cell barcodes.
cbtop10000              Top 10,000 rows for v1, v2, and v3 cell barcode
                        whitelist files
countUMI                Count the number of UMIs for each gene and
                        output count matrix
demultiplex             Demultiplex cell barcodes and assign cell
                        specific reads
gview                   Visualize gene isoforms
qcplots                 Visualize data quality
rview                   Visualize aligned reads
sceExample              Example SingleCellExperiment Object
scruff                  Run scruff pipeline
tenxBamqc               Generate and output 10X read alignment data
                        quality metrics
validCb                 Cell barcode whitelist (737K-august-2016.txt)
