Package: scRepertoire
Title: A toolkit for single-cell immune receptor profiling
Version: 1.0.0
Authors@R: c(
    person(given = "Nick", family = "Borcherding", role = c("aut", "cre"), email = "ncborch@gmail.com"))
Description: scRepertoire was built to process data derived from the 10x Genomics Chromium Immune Profiling for both T-cell receptor (TCR) and immunoglobulin (Ig) enrichment workflows and subsequently interacts with the popular Seurat and SingleCellExperiment R packages.
License: Apache License 2.0
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
biocViews: Software, ImmunoOncology, SingleCell, Classification,
        Annotation, Sequencing
Depends: dplyr, ggalluvial, ggplot2, reshape2, R (>= 4.0)
Imports: Biostrings, RColorBrewer, colorRamps, ggdendro, ggfittext,
        stringr, vegan, powerTCR, SummarizedExperiment,
        SingleCellExperiment, Seurat
Suggests: knitr, rmarkdown, BiocStyle, scater, circlize, scales
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/scRepertoire
git_branch: RELEASE_3_12
git_last_commit: 4a17abd
git_last_commit_date: 2020-10-27
Date/Publication: 2020-10-27
NeedsCompilation: no
Packaged: 2020-10-28 03:21:01 UTC; biocbuild
Author: Nick Borcherding [aut, cre]
Maintainer: Nick Borcherding <ncborch@gmail.com>
Built: R 4.0.3; ; 2020-11-01 03:07:50 UTC; unix
