Package: scRecover
Type: Package
Title: scRecover for imputation of single-cell RNA-seq data
Version: 1.0.0
Date: 2019-04-28
Author: Zhun Miao, Xuegong Zhang <zhangxg@tsinghua.edu.cn>
Maintainer: Zhun Miao <miaoz13@mails.tsinghua.edu.cn>
Description: scRecover is an R package for imputation of single-cell RNA-seq (scRNA-seq) data.
    It will detect and impute dropout values in a scRNA-seq raw read counts matrix while 
    keeping the real zeros unchanged, since there are both dropout zeros and real zeros in 
    scRNA-seq data. By combination with scImpute, SAVER and MAGIC, scRecover not only detects 
    dropout and real zeros at higher accuracy, but also improve the downstream clustering and 
    visualization results.
License: GPL
Encoding: UTF-8
Depends: R (>= 3.4.0)
Imports: stats, utils, methods, graphics, doParallel, foreach,
        parallel, penalized, kernlab, rsvd, Matrix (>= 1.2-14), MASS
        (>= 7.3-45), pscl (>= 1.4.9), bbmle (>= 1.0.18), gamlss (>=
        4.4-0), preseqR (>= 4.0.0), SAVER (>= 1.1.1), Rmagic (>=
        1.3.0), BiocParallel (>= 1.12.0)
Suggests: knitr, rmarkdown, SingleCellExperiment, testthat
VignetteBuilder: knitr
URL: https://miaozhun.github.io/scRecover
BugReports: https://github.com/miaozhun/scRecover/issues
biocViews: GeneExpression, SingleCell, RNASeq, Transcriptomics,
        Sequencing, Preprocessing, Software
RoxygenNote: 6.0.1
git_url: https://git.bioconductor.org/packages/scRecover
git_branch: RELEASE_3_9
git_last_commit: 3299d20
git_last_commit_date: 2019-05-02
Date/Publication: 2019-05-02
NeedsCompilation: no
Packaged: 2019-05-03 03:34:22 UTC; biocbuild
Built: R 3.6.1; ; 2019-07-21 22:21:11 UTC; unix
