Package: scPCA
Title: Sparse Contrastive Principal Component Analysis
Version: 1.2.0
Authors@R: c(
    person(given = "Philippe",
           family = "Boileau",
           role = c("aut", "cre", "cph"),
           email = "philippe_boileau@berkeley.edu",
           comment = c(ORCID = "0000-0002-4850-2507")),
    person(given = "Nima",
           family = "Hejazi",
           role = "aut",
           email = "nh@nimahejazi.org",
           comment = c(ORCID = "0000-0002-7127-2789")),
    person(given = "Sandrine",
           family = "Dudoit",
           role = c("ctb", "ths"),
           email = "sandrine@stat.berkeley.edu",
           comment = c(ORCID = "0000-0002-6069-8629"))
   )
Description: A toolbox for sparse contrastive principal component analysis
    (scPCA) of high-dimensional biological data. scPCA combines the stability
    and interpretability of sparse PCA with contrastive PCA's ability to
    disentangle biological signal from techical noise through the use of control
    data. Also implements and extends cPCA.
Depends: R (>= 3.6)
Imports: stats, methods, assertthat, tibble, dplyr, purrr, stringr,
        Rdpack, matrixStats, BiocParallel, elasticnet, sparsepca,
        cluster, kernlab, origami
Suggests: testthat (>= 2.1.0), covr, knitr, rmarkdown, BiocStyle,
        Matrix, ggplot2, ggpubr, splatter, SingleCellExperiment,
        microbenchmark
License: MIT + file LICENSE
URL: https://github.com/PhilBoileau/scPCA
BugReports: https://github.com/PhilBoileau/scPCA/issues
Encoding: UTF-8
LazyData: true
VignetteBuilder: knitr
RoxygenNote: 7.1.0
RdMacros: Rdpack
biocViews: PrincipalComponent, GeneExpression, DifferentialExpression,
        Sequencing, Microarray, RNASeq
git_url: https://git.bioconductor.org/packages/scPCA
git_branch: RELEASE_3_11
git_last_commit: 83adc07
git_last_commit_date: 2020-04-27
Date/Publication: 2020-04-27
NeedsCompilation: no
Packaged: 2020-04-28 04:33:05 UTC; biocbuild
Author: Philippe Boileau [aut, cre, cph]
    (<https://orcid.org/0000-0002-4850-2507>),
  Nima Hejazi [aut] (<https://orcid.org/0000-0002-7127-2789>),
  Sandrine Dudoit [ctb, ths] (<https://orcid.org/0000-0002-6069-8629>)
Maintainer: Philippe Boileau <philippe_boileau@berkeley.edu>
Built: R 4.0.0; ; 2020-05-14 12:16:08 UTC; unix
