Package: scClassifR
Type: Package
Title: Pretrained learning models for cell type prediction on single
        cell RNA-sequencing data
Version: 1.2.0
Authors@R: 
    c(person("Vy", "Nguyen", email = "thi-tuong-vy.nguyen@meduniwien.ac.at", role = c("aut"), comment = c(ORCID = "0000-0003-3436-3662")),
      person("Johannes", "Griss", email = "johannes.griss@meduniwien.ac.at", role = c("cre"), comment = c(ORCID = "0000-0003-2206-9511")))
Description: The package comprises a set of pretrained machine learning models to predict basic immune cell types. This enables all users to quickly get a first annotation of the cell types present in their dataset without requiring prior knowledge. scClassifR also allows users to train their own models to predict new cell types based on specific research needs.
License: MIT + file LICENSE
Encoding: UTF-8
biocViews: SingleCell, Transcriptomics, GeneExpression,
        SupportVectorMachine, Classification, Software
Imports: dplyr, ggplot2, caret, ROCR, pROC, data.tree, methods, stats,
        e1071, ape, kernlab, utils
Suggests: knitr, rmarkdown, scRNAseq, testthat
VignetteBuilder: knitr
Depends: R (>= 4.1), Seurat, SingleCellExperiment, SummarizedExperiment
LazyData: true
LazyDataCompression: xz
RoxygenNote: 7.1.1
PackageStatus: Deprecated
git_url: https://git.bioconductor.org/packages/scClassifR
git_branch: RELEASE_3_14
git_last_commit: e9e304f
git_last_commit_date: 2021-10-26
Date/Publication: 2021-10-26
NeedsCompilation: no
Packaged: 2021-10-26 22:43:35 UTC; biocbuild
Author: Vy Nguyen [aut] (<https://orcid.org/0000-0003-3436-3662>),
  Johannes Griss [cre] (<https://orcid.org/0000-0003-2206-9511>)
Maintainer: Johannes Griss <johannes.griss@meduniwien.ac.at>
Built: R 4.1.1; ; 2021-11-04 12:30:44 UTC; unix
