# Pretrained learning models for cell type prediction on single cell RNA-sequencing data

## Documentation for package ‘scClassifR’ version 1.2.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

balance_dataset | Internal functions of scClassifR package
cell_type | cell_type
cell_type<- | Setter for cell_type Change cell type for a classifier
checkCellTypeValidity | Internal functions of scClassifR package
checkClassifierValidity | Internal functions of scClassifR package
checkFeaturesValidity | Internal functions of scClassifR package
checkObjectValidity | Internal functions of scClassifR package
checkParentValidity | Internal functions of scClassifR package
checkPThresValidity | Internal functions of scClassifR package
check_parent_child_coherence | Internal functions of scClassifR package
check_parent_child_coherence-method | Internal functions of scClassifR package
classify_cells | Classify cells from multiple models
classify_cells-method | Classify cells from multiple models
classify_clust | Internal functions of scClassifR package
clf | clf
clf<- | Internal functions of scClassifR package
construct_tag_vect | Internal functions of scClassifR package
construct_tag_vect-method | Internal functions of scClassifR package
default_models | Pretrained classifiers for human cells
delete_model | Delete model/branch from package
features | features
features<- | Internal functions of scClassifR package
filter_cells | Internal functions of scClassifR package
filter_cells-method | Internal functions of scClassifR package
load_models | Internal functions of scClassifR package
make_prediction | Internal functions of scClassifR package
parent | parent
parent<- | Internal functions of scClassifR package
plant_tree | Plant tree from list of models
plot_roc_curve | Plot roc curve
process_parent_clf | Internal functions of scClassifR package
process_parent_clf-method | Internal functions of scClassifR package
p_thres | p_thres
p_thres<- | Setter for predicting probability threshold
save_new_model | Save a model to the package
scClassifR | scClassifR class.
select_features | Internal functions of scClassifR package
show-method | Show object
simplify_prediction | Internal functions of scClassifR package
test_classifier | Testing process.
test_classifier-method | Testing process.
test_performance | Internal functions of scClassifR package
tirosh_mel80_example | A Seurat Object Sample
train_classifier | Train cell type classifier
train_classifier-method | Train cell type classifier
train_func | Internal functions of scClassifR package
transform_to_zscore | Internal functions of scClassifR package
verify_parent | Internal functions of scClassifR package