$,IndexedFst-method	IndexedFst-class
as.data.frame,IndexedFst-method	IndexedFst-class
colnames,IndexedFst-method	IndexedFst-class
enrichedMirTxPairs	enrichedMirTxPairs
getTranscriptSequence	getTranscriptSequence
head,IndexedFst-method	IndexedFst-class
IndexedFst	IndexedFst-class
IndexedFst-class	IndexedFst-class
length,IndexedFst-method	IndexedFst-class
lengths,IndexedFst-method	IndexedFst-class
loadIndexedFst	save-load-IndexedFst
names,IndexedFst-method	IndexedFst-class
ncol,IndexedFst-method	IndexedFst-class
nrow,IndexedFst-method	IndexedFst-class
plotSitesOnUTR	plotSitesOnUTR
runFullScan	runFullScan
saveIndexedFst	save-load-IndexedFst
ScanMiRAnno	ScanMiRAnno
ScanMiRAnno-class	ScanMiRAnno
ScanMiRAnno-methods	ScanMiRAnno-methods
scanMiRApp	scanMiRApp
scanMiRserver	scanMiRserver
scanMiRui	scanMiRui
show,IndexedFst-method	IndexedFst-class
show,ScanMiRAnno-method	ScanMiRAnno-methods
summary,IndexedFst-method	IndexedFst-class
summary,ScanMiRAnno-method	ScanMiRAnno-methods
[,IndexedFst,ANY,ANY,ANY-method	IndexedFst-class
[[,IndexedFst,ANY,ANY-method	IndexedFst-class
