# scanMiR

## Documentation for package ‘scanMiR’ version 1.12.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

aggregateMatches | aggregateMatches
assignKdType | assignKdType
c-method | miRNA affinity models
conservation | conservation
dummyKdData | Create dummy log_kd per 12-mer data
findSeedMatches | Predicting and characterizing miRNA binding sites
get3pAlignment | Finds 3' complementary binding of a miRNA
get8merRange | get8merRange
getKdModel | getKdModel
getKmers | getKmers
getMatchTypes | getMatchTypes
getRandomSeq | getRandomSeq
getSeed8mers | getSeed8mers
KdModel | miRNA affinity models
KdModel-class | miRNA affinity models
KdModel-methods | miRNA affinity models
KdModelList | KdModelList
KdModelList-class | KdModelList
KdModelList-methods | Methods for the 'KdModelList' classes
KdModelList-methods-method | Methods for the 'KdModelList' classes
plotKdModel | plotKdModel
removeOverlappingRanges | removeOverlappingRanges
SampleKdModel | Example KdModel (hsa-miR-155-5p)
SampleTranscript | Example transcript sequence
show-method | miRNA affinity models
summary-method | miRNA affinity models
summary-method | Methods for the 'KdModelList' classes
viewTargetAlignment | viewTargetAlignment
[-method | Methods for the 'KdModelList' classes