# An alignment and integration method for single cell genomics

## Documentation for package ‘scAlign’ version 1.11.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

cellbench | CellBench data for benchmarking
gaussianKernel | Computes gaussian kernel matrix
PlotTSNE | Creates tsne plot
scAlign | Run scAlign framework
scAlignCreateObject | Creates scAlign object
scAlignMulti | Run scAlignMultiway alignment
scAlignOptions | Set training options