Package: SBGNview
Title: Overlay omics data onto SBGN pathway diagram
Description: 
    SBGNview is an R package for visualizing omics data on SBGN pathway maps. 
    Given omics data and a SBGN-ML file with layout information,
    SBGNview can display omics data as colors on glyphs and output image files.
    SBGNview provides extensive options to control glyph and edge features 
    (e.g. color, line width etc.). To facilitate pathway based analysis,
    SBGNview also provides functions to extract molecule sets from SBGN-ML files.
    SBGNview can map a large collection of gene, protein and compound ID typs to glyphs. 
Version: 1.2.0
Author: 
    Xiaoxi Dong, Weijun Luo
Maintainer: Xiaoxi Dong <dfdongxiaoxi@gmail.com>
Depends: R (>= 3.6), pathview, SBGNview.data
Imports: Rdpack, grDevices, methods, stats, utils, xml2, rsvg, igraph,
        rmarkdown, knitr, SummarizedExperiment, AnnotationDbi
RdMacros: Rdpack
License: AGPL-3
LazyData: FALSE
Collate: SBGN.to.SVG.R parsing.utilities.R plot.utilities.R data.R
        SBGNview.R SBGNview.obj.fun.R col.panel.R highlight.utilities.R
RoxygenNote: 6.1.1
Suggests: testthat, gage
VignetteBuilder: knitr
Encoding: UTF-8
biocViews: GeneTarget, Pathways, GraphAndNetwork, Visualization,
        GeneSetEnrichment, DifferentialExpression, GeneExpression,
        Microarray, RNASeq, Genetics, Metabolomics, Proteomics,
        SystemsBiology, Sequencing, GeneTarget
URL: https://github.com/datapplab/SBGNview
BugReports: https://github.com/datapplab/SBGNview/issues
git_url: https://git.bioconductor.org/packages/SBGNview
git_branch: RELEASE_3_11
git_last_commit: 4c9a3d3
git_last_commit_date: 2020-04-27
Date/Publication: 2020-04-27
NeedsCompilation: no
Packaged: 2020-04-28 04:13:29 UTC; biocbuild
Built: R 4.0.0; ; 2020-05-13 06:39:08 UTC; unix
