rTRM-package	rTRM-package
annotateFreq	annotateFreq
annotateModule	annotateModule
annotateTRM	annotateTRM
biogrid_hs	biogrid_hs
biogrid_mm	biogrid_mm
findTRM	findTRM
getAnnotations	getAnnotations
getBiogridData	getBiogridData
getConcentricList	getConcentricList
getLargestComp	getLargestComp
getMaps	getMaps
getMatrices	getMatrices
getMotifsFromEntrezgene	getMotifsFromEntrezgene
getMotifsFromSymbol	getMotifsFromSymbol
getOrthologFromMatrix	getOrthologFromMatrix
getOrthologs	getOrthologs
getOrthologsFromBiomart	getOrthologsFromBiomart
getSequencesFromGenome	getSequencesFromGenome
getSimilarityMatrix	getSimilarityMatrix
getTFclass	getTFclass
getTFclassFromEntrezgene	getTFclassFromEntrezgene
getTFterms	getTFterms
initBiomart	initBiomart
layout.arc	layout.arc
layout.concentric	layout.concentric
plotDegree	plotDegree
plotGraph	plotGraph
plotTRM	plotTRM
plotTRMlegend	plotTRMlegend
processBiogrid	processBiogrid
removeVertices	removeVertices
rTRM	rTRM-package
writeTRMreport	writeTRMreport
