RTN-package	RTN-package
AVS-class	AVS-class
avs.evse	avs.evse
avs.evse,AVS-method	AVS-class
avs.get	avs.get
avs.get,AVS-method	AVS-class
avs.pevse	avs.pevse
avs.pevse,AVS-method	AVS-class
avs.plot1	avs.plot1
avs.plot2	avs.plot2
avs.rvse	avs.rvse
avs.rvse,AVS-method	AVS-class
avs.vse	avs.vse
avs.vse,AVS-method	AVS-class
pksData	RTN.data
RTN	RTN-package
stni	TNI.data
tfsData	RTN.data
TNA-class	TNA-class
tna.get	tna.get
tna.get,TNA-method	TNA-class
tna.gsea1	tna.gsea1
tna.gsea1,TNA-method	TNA-class
tna.gsea2	tna.gsea2
tna.gsea2,TNA-method	TNA-class
tna.mra	tna.mra
tna.mra,TNA-method	TNA-class
tna.plot.gsea1	tna.plot.gsea1
tna.plot.gsea2	tna.plot.gsea2
tnaData	RTN.data
TNI-class	TNI-class
tni.alpha.adjust	tni.alpha.adjust
tni.annotate.regulons	tni.annotate.regulons
tni.annotate.regulons,TNI-method	TNI-class
tni.annotate.samples	tni.annotate.samples
tni.annotate.samples,TNI-method	TNI-class
tni.area3	tni.area3
tni.area3,TNI-method	TNI-class
tni.bootstrap	tni.bootstrap
tni.bootstrap,TNI-method	TNI-class
tni.conditional	tni.conditional
tni.conditional,TNI-method	TNI-class
tni.constructor	tni.constructor
tni.dpi.filter	tni.dpi.filter
tni.dpi.filter,TNI-method	TNI-class
tni.get	tni.get
tni.get,TNI-method	TNI-class
tni.graph	tni.graph
tni.graph,TNI-method	TNI-class
tni.gsea2	tni.gsea2
tni.gsea2,TNI-method	TNI-class
tni.overlap.genesets	tni.overlap.genesets
tni.overlap.genesets,TNI-method	TNI-class
tni.permutation	tni.permutation
tni.permutation,TNI-method	TNI-class
tni.plot.checks	tni.plot.checks
tni.plot.sre	tni.plot.sre
tni.preprocess	tni.preprocess
tni.preprocess,TNI-method	TNI-class
tni.prune	tni.prune
tni.prune,TNI-method	TNI-class
tni.regulon.summary	tni.regulon.summary
tni.regulon.summary,TNI-method	TNI-class
tni.replace.samples	tni.replace.samples
tni.replace.samples,TNI-method	TNI-class
tni.sre	tni.sre
tni.sre,TNI-method	TNI-class
tni2tna.preprocess	tni2tna.preprocess
tni2tna.preprocess,TNI-method	TNI-class
tniData	RTN.data
upgradeTNA	upgradeTNA
upgradeTNI	upgradeTNI
