# The Cancer Genome Atlas Data Integration

## Documentation for package ‘RTCGA’ version 1.28.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

RTCGA-package | The Caner Genome Atlas data integration
boxplotTCGA | Create Boxplots for TCGA Datasets
checkTCGA | Information About Datasets from TCGA Project
convertPANCAN12 | Convert Data from RTCGA Family to Bioconductor Classes
convertTCGA | Convert Data from RTCGA Family to Bioconductor Classes
datasetsTCGA | RTCGA - The Family of R Packages with Data from The Cancer Genome Atlas Study
downloadTCGA | Download TCGA Data
expressionsTCGA | Gather Expressions for TCGA Datasets
heatmapTCGA | Create Heatmaps for TCGA Datasets
infoTCGA | Information About Cohorts from TCGA Project
installTCGA | Install Data Packages from RTCGA Family
kmTCGA | Plot Kaplan-Meier Estimates of Survival Curves for Survival Data
mutationsTCGA | Gather Mutations for TCGA Datasets
pcaTCGA | Plot Two Main Components of Principal Component Analysis
readTCGA | Read TCGA data to the tidy Format
RTCGA | The Caner Genome Atlas data integration
RTCGA.data | RTCGA - The Family of R Packages with Data from The Cancer Genome Atlas Study
survivalTCGA | Extract Survival Information from Datasets Included in RTCGA.clinical and RTCGA.clinical.20160128 Packages
theme_RTCGA | RTCGA Theme for ggplot2