# Signature-based Clustering for Diagnostic Purposes

## Documentation for package ‘rScudo’ version 1.16.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

rScudo-package | Signature-based Clustering for Diagnostic Purposes
consensusDownSignatures | Class ScudoResults
consensusDownSignatures-method | Class ScudoResults
consensusUpSignatures | Class ScudoResults
consensusUpSignatures-method | Class ScudoResults
distMatrix | Class ScudoResults
distMatrix-method | Class ScudoResults
downSignatures | Class ScudoResults
downSignatures-method | Class ScudoResults
groupsAnnotation | Class ScudoResults
groupsAnnotation-method | Class ScudoResults
scudoClassify | Performes classification using SCUDO
scudoCytoscape | Create a Cytoscape network from the output of scudoNetwork
scudoModel | Generate model for 'caret::train'
scudoNetwork | Create graph from a ScudoResults object
scudoNetwork-method | Create graph from a ScudoResults object
scudoParams | Class ScudoResults
scudoParams-method | Class ScudoResults
scudoPlot | Plot scudoNetwork result
ScudoResults | Class ScudoResults
ScudoResults-class | Class ScudoResults
scudoTest | Performs SCUDO analysis on test dataset
scudoTrain | Performs SCUDO analysis
selectedFeatures | Class ScudoResults
selectedFeatures-method | Class ScudoResults
show-method | Class ScudoResults
upSignatures | Class ScudoResults
upSignatures-method | Class ScudoResults