# RLSeq: An analysis package for R-loop mapping data

## Documentation for package ‘RLSeq’ version 1.6.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

analyzeRLFS | Analyze RLFS
auxdata | Auxiliary Data
available_genomes | Available Genomes
checkRLFSAnno | Check RLFS
corrAnalyze | Analyze Correlations
corrHeatmap | Plot Correlation Results
featureEnrich | Test Genomic Feature Enrichment
feature_ggplot | Feature ggplot
geneAnnotation | Annotate R-Loops with Genes
genomeMasks | Genome Masks
getChromSizes | Get Chrom Sizes
getGSSignal | Get GS Signal
getRLFSAnno | Get RLFS
noiseAnalyze | Analyze sample noise
noiseComparisonPlot | Creates a metaplot for comparing noise analysis results with RLBase
peak_stats | Build peak statistics tibble
plotEnrichment | Plot Enrichment Test Results
plotFingerprint | Plot noise analysis results as a fingerprint plot
plotRLFSRes | Plot RLFS analysis results
plotRLRegionOverlap | Plot RL-Region overlap with RLRanges
plotTxFeatureOverlap | Plot Transcript Feature Overlap
predictCondition | Predict Condition
randomWindows | Random Genomic Windows
report | RLSeq Report
rlbaseNoiseAnalyze | RLBase Sample Noise Analysis Results
RLRanges | Construct RLRanges Dataset
RLRanges-class | Construct RLRanges Dataset
RLRangesFromRLBase | Access RLBase samples as RLRanges
rlRegionTest | R-Loop region test
rlresult | RLSeq Results
RLResults | RLSeq Results
RLResults-class | RLSeq Results
rlsampleTxOl | RLBase Sample Transcript Feature Overlaps
RLSeq | RLSeq
tableToRegions | Table to Regions
txFeatureOverlap | Calculate overlap with transcript features
urlExists | Check if URL exists