Package: RIPAT
Title: Retroviral Integration Pattern Analysis Tool (RIPAT)
Version: 1.10.0
Authors@R: person("Min-Jeong", "Baek", email="mjbaek16@korea.ac.kr", role = c("aut", "cre"))
Description: RIPAT is developed as an R package for retroviral integration sites annotation and 
             distribution analysis. RIPAT needs local alignment results from BLAST and BLAT.
             Specific input format is depicted in RIPAT manual. RIPAT provides RV integration pattern
             analysis result as forms of R objects, excel file with multiple sheets and plots.
biocViews: Annotation
Depends: R (>= 4.0)
Imports: biomaRt (>= 2.38.0), GenomicRanges (>= 1.34.0), ggplot2 (>=
        3.1.0), grDevices (>= 3.5.3), IRanges (>= 2.16.0), karyoploteR
        (>= 1.6.3), openxlsx (>= 4.1.4), plyr (>= 1.8.4), regioneR (>=
        1.12.0), rtracklayer (>= 1.42.2), stats (>= 3.5.3), stringr (>=
        1.3.1), utils (>= 3.5.3)
Suggests: knitr (>= 1.28)
VignetteBuilder: knitr
License: Artistic-2.0
URL: https://github.com/bioinfo16/RIPAT/
Encoding: UTF-8
RoxygenNote: 7.1.0
git_url: https://git.bioconductor.org/packages/RIPAT
git_branch: RELEASE_3_17
git_last_commit: 711cf3d
git_last_commit_date: 2023-04-25
Date/Publication: 2023-04-25
NeedsCompilation: no
Packaged: 2023-04-25 22:40:07 UTC; biocbuild
Author: Min-Jeong Baek [aut, cre]
Maintainer: Min-Jeong Baek <mjbaek16@korea.ac.kr>
Built: R 4.3.1; ; 2023-07-18 02:34:52 UTC; unix
