{% set version = "1.12.0" %}
{% set name = "ribosomeProfilingQC" %}
{% set bioc = "3.17" %}

package:
  name: 'bioconductor-{{ name|lower }}'
  version: '{{ version }}'
source:
  url:
    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
  md5: 1c9cafb9bd9b9816cc073d7da37b1b4c
build:
  number: 0
  rpaths:
    - lib/R/lib/
    - lib/
  noarch: generic
# Suggests: RUnit, BiocStyle, knitr, BSgenome.Drerio.UCSC.danRer10, edgeR, limma, testthat, rmarkdown
requirements:
  host:
    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
    - 'bioconductor-edaseq >=2.34.0,<2.35.0'
    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
    - 'bioconductor-iranges >=2.34.0,<2.35.0'
    - 'bioconductor-motifstack >=1.44.0,<1.45.0'
    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
    - 'bioconductor-rsubread >=2.14.0,<2.15.0'
    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
    - 'bioconductor-ruvseq >=1.34.0,<1.35.0'
    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
    - 'bioconductor-xvector >=0.40.0,<0.41.0'
    - r-base
    - r-cluster
    - r-ggfittext
    - r-ggplot2
    - r-ggrepel
    - r-scales
  run:
    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
    - 'bioconductor-edaseq >=2.34.0,<2.35.0'
    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
    - 'bioconductor-iranges >=2.34.0,<2.35.0'
    - 'bioconductor-motifstack >=1.44.0,<1.45.0'
    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
    - 'bioconductor-rsubread >=2.14.0,<2.15.0'
    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
    - 'bioconductor-ruvseq >=1.34.0,<1.35.0'
    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
    - 'bioconductor-xvector >=0.40.0,<0.41.0'
    - r-base
    - r-cluster
    - r-ggfittext
    - r-ggplot2
    - r-ggrepel
    - r-scales
test:
  commands:
    - '$R -e "library(''{{ name }}'')"'
about:
  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
  license: 'GPL (>=3) + file LICENSE'
  summary: 'Ribosome Profiling Quality Control'
  description: 'Ribo-Seq (also named ribosome profiling or footprinting) measures translatome (unlike RNA-Seq, which sequences the transcriptome) by direct quantification of the ribosome-protected fragments (RPFs). This package provides the tools for quality assessment of ribosome profiling. In addition, it can preprocess Ribo-Seq data for subsequent differential analysis.'
  license_file: LICENSE

