# GenoMetric Query Language for R/Bioconductor

## Documentation for package ‘RGMQL’ version 1.12.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

aggregate | Method aggregate
aggregate-method | Method aggregate
AGGREGATES-Object | AGGREGATES object class constructor
ALL | PARAM object class constructor
ANY | PARAM object class constructor
arrange | Method arrange
arrange-method | Method arrange
ASC | Ordering functions
AVG | AGGREGATES object class constructor
BAG | AGGREGATES object class constructor
BAGD | AGGREGATES object class constructor
collect | Method collect
collect-method | Method collect
compile_query | Compile GMQL query
compile_query_fromfile | Compile GMQL query
condition_evaluation | Condition evaluation functions
conds | Condition evaluation functions
COUNT | AGGREGATES object class constructor
COUNTSAMP | AGGREGATES object class constructor
cover | Method cover
cover-method | Method cover
Cover-Param | PARAM object class constructor
delete_dataset | Delete dataset
DESC | Ordering functions
DG | DISTAL object class constructor
DGE | DISTAL object class constructor
DISTAL-Object | DISTAL object class constructor
DL | DISTAL object class constructor
DLE | DISTAL object class constructor
DOWN | DISTAL object class constructor
download_as_GRangesList | Download Dataset
download_dataset | Download Dataset
Evaluation-Function | Condition evaluation functions
execute | GMQL Function: EXECUTE
export_gmql | Create GMQL dataset from GRangesList
extend | Method extend
extend-method | Method extend
filter | Method filter
filter-extract | PARAM object class constructor
filter-method | Method filter
filter_and_extract | Filter and extract function
FULL | PARAM object class constructor
group_by | Method group_by
group_by-method | Method group_by
import_gmql | Create GRangesList from GMQL dataset
init_gmql | Init GMQL server
login_gmql | Login to GMQL
logout_gmql | Logout from GMQL
log_job | Show a job log or trace
map | Method map
map-method | Method map
MAX | AGGREGATES object class constructor
MD | DISTAL object class constructor
MEDIAN | AGGREGATES object class constructor
merge | Method merge
merge-method | Method merge
META | OPERATOR object class constructor
MIN | AGGREGATES object class constructor
NIL | OPERATOR object class constructor
OPERATOR-Object | OPERATOR object class constructor
Ordering-Functions | Ordering functions
Q1 | AGGREGATES object class constructor
Q2 | AGGREGATES object class constructor
Q3 | AGGREGATES object class constructor
read_gmql | Function read
read_GRangesList | Function read
register_gmql | Register into remote GMQL
remote_processing | Disable or Enable remote processing
run_query | Run a GMQL query
run_query_fromfile | Run a GMQL query
sample_metadata | Show metadata list from dataset sample
sample_region | Show regions data from a dataset sample
save_query | Save GMQL query
save_query_fromfile | Save GMQL query
select | Method select
select-method | Method select
semijoin | Semijoin condition
setdiff | Method setdiff
setdiff-method | Method setdiff
show_all_metadata | Show a metadata cartesian product of all metadata present into the dataset and the region sets
show_datasets_list | Show datasets
show_jobs_list | Show all jobs
show_job_log | Show a job log or trace
show_queries_list | Show all queries
show_samples_list | Show dataset samples
show_schema | Show dataset schema
SQRT | OPERATOR object class constructor
STD | AGGREGATES object class constructor
stop_gmql | Stop GMQL server
stop_job | Stop a job
SUM | AGGREGATES object class constructor
take | Method take
take-method | Method take
trace_job | Show a job log or trace
union | Method union
union-method | Method union
UP | DISTAL object class constructor
upload_dataset | Upload dataset