# Generated by roxygen2: do not edit by hand

S3method(plot,localZScoreResults)
S3method(plot,localZScoreResultsList)
S3method(plot,permTestResults)
S3method(plot,permTestResultsList)
S3method(print,permTestResults)
S3method(summary,permTestResults)
S3method(summary,permTestResultsList)
export(characterToBSGenome)
export(circularRandomizeRegions)
export(commonRegions)
export(createFunctionsList)
export(createRandomRegions)
export(emptyCacheRegioneR)
export(extendRegions)
export(filterChromosomes)
export(getChromosomesByOrganism)
export(getGenome)
export(getGenomeAndMask)
export(getMask)
export(joinRegions)
export(listChrTypes)
export(localZScore)
export(maskFromBSGenome)
export(meanDistance)
export(meanInRegions)
export(mergeRegions)
export(numOverlaps)
export(overlapGraphicalSummary)
export(overlapPermTest)
export(overlapRegions)
export(permTest)
export(plotRegions)
export(randomizeRegions)
export(recomputePermTest)
export(resampleRegions)
export(splitRegions)
export(subtractRegions)
export(toDataframe)
export(toGRanges)
export(uniqueRegions)
import(BSgenome)
import(GenomeInfoDb)
import(graphics)
import(parallel)
importFrom(Biostrings,collapse)
importFrom(Biostrings,masks)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,GRangesList)
importFrom(GenomicRanges,countOverlaps)
importFrom(GenomicRanges,distanceToNearest)
importFrom(GenomicRanges,elementMetadata)
importFrom(GenomicRanges,end)
importFrom(GenomicRanges,findOverlaps)
importFrom(GenomicRanges,mcols)
importFrom(GenomicRanges,reduce)
importFrom(GenomicRanges,shift)
importFrom(GenomicRanges,start)
importFrom(IRanges,IRanges)
importFrom(IRanges,tolower)
importFrom(S4Vectors,Rle)
importFrom(S4Vectors,queryHits)
importFrom(S4Vectors,subjectHits)
importFrom(memoise,forget)
importFrom(memoise,memoise)
importFrom(methods,hasArg)
importFrom(methods,is)
importFrom(rtracklayer,import)
importFrom(stats,dnorm)
importFrom(stats,qnorm)
importFrom(stats,rnorm)
importFrom(stats,runif)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(tools,file_ext)
importFrom(utils,as.roman)
importFrom(utils,head)
importFrom(utils,setTxtProgressBar)
importFrom(utils,txtProgressBar)
