buildAnnotationDatabase	buildAnnotationDatabase
buildAnnotationStore	buildAnnotationStore
buildCustomAnnotation	buildCustomAnnotation
calcCoverage	calcCoverage
coverageRef	coverageRef
coverageRnaRef	coverageRnaRef
getAnnotation	getAnnotation
getBiotypes	getBiotypes
getInstalledAnnotations	getInstalledAnnotations
getr	simpleGetSet
importCustomAnnotation	importCustomAnnotation
kmeansDesign	kmeansDesign
loadAnnotation	loadAnnotation
mergeRuns	mergeRuns
preprocessRanges	preprocessRanges
profileMatrix	profileMatrix
recoup	recoup
recoup-defunct	recoup-defunct
recoup-deprecated	recoup-deprecated
recoupCorrelation	recoupCorrelation
recoupHeatmap	recoupHeatmap
recoupPlot	recoupPlot
recoupProfile	recoupProfile
recoup_test_data	recoup_test_data
removeData	removeData
rpMatrix	rpMatrix
setr	simpleGetSet
sliceObj	sliceObj
test.design	recoup_test_data
test.exons	recoup_test_data
test.genome	recoup_test_data
test.input	recoup_test_data
