Package: recountmethylation
Version: 1.16.0
Title: Access and analyze public DNA methylation array data
        compilations
Authors@R: c(person(c("Sean", "K"), "Maden", role = c("cre", "aut"),
        email = "maden@ohsu.edu", comment = c(ORCID = "0000-0002-2212-4894")),
    person("Brian", "Walsh", role = "aut", email = "walsbr@ohsu.edu", comment = c(ORCID = "0000-0003-0913-1528")),
    person("Kyle", "Ellrott", role = "aut", email = "kellrott@gmail.com", comment = c(ORCID = "0000-0002-6573-5900")),
    person("Kasper D", "Hansen", role = "aut", email = "hansen@jhsph.edu", comment = c(ORCID = "0000-0003-0086-0687")),
    person("Reid F", "Thompson", role = "aut", comment = c(ORCID = "0000-0003-3661-5296")),
    person("Abhinav", "Nellore", role = "aut", email = "nellore@ohsu.edu", comment = c(ORCID = "0000-0001-8145-1484")))
Description: Resources for cross-study analyses of public DNAm array data from NCBI GEO repo, produced 
    using Illumina's Infinium HumanMethylation450K (HM450K) and MethylationEPIC (EPIC) platforms. 
    Provided functions enable download, summary, and filtering of large compilation files. Vignettes 
    detail background about file formats, example analyses, and more. Note the disclaimer on package 
    load and consult the main manuscripts for further info.
License: Artistic-2.0
Encoding: UTF-8
URL: https://github.com/metamaden/recountmethylation
BugReports: https://github.com/metamaden/recountmethylation/issues
Depends: R (>= 4.1)
Imports: minfi, HDF5Array, rhdf5, S4Vectors, utils, methods, RCurl,
        R.utils, BiocFileCache, basilisk, reticulate,
        DelayedMatrixStats
Suggests: minfiData, minfiDataEPIC, knitr, testthat, ggplot2,
        gridExtra, rmarkdown, BiocStyle, GenomicRanges, limma,
        ExperimentHub, AnnotationHub
VignetteBuilder: knitr
biocViews: DNAMethylation, Epigenetics, Microarray, MethylationArray,
        ExperimentHub
RoxygenNote: 7.2.0
git_url: https://git.bioconductor.org/packages/recountmethylation
git_branch: RELEASE_3_20
git_last_commit: 4cb7d32
git_last_commit_date: 2024-10-29
Repository: Bioconductor 3.20
Date/Publication: 2024-10-29
NeedsCompilation: no
Packaged: 2024-10-30 02:25:23 UTC; biocbuild
Author: Sean K Maden [cre, aut] (<https://orcid.org/0000-0002-2212-4894>),
  Brian Walsh [aut] (<https://orcid.org/0000-0003-0913-1528>),
  Kyle Ellrott [aut] (<https://orcid.org/0000-0002-6573-5900>),
  Kasper D Hansen [aut] (<https://orcid.org/0000-0003-0086-0687>),
  Reid F Thompson [aut] (<https://orcid.org/0000-0003-3661-5296>),
  Abhinav Nellore [aut] (<https://orcid.org/0000-0001-8145-1484>)
Maintainer: Sean K Maden <maden@ohsu.edu>
Built: R 4.4.2; ; 2025-01-04 15:32:50 UTC; unix
