Package: RCM
Type: Package
Title: Fit row-column association models with the negative binomial
        distribution for the microbiome
Version: 1.6.0
Author: Stijn Hawinkel <stijn.hawinkel@ugent.be>
Maintainer: Joris Meys <joris.meys@ugent.be>
Description: Combine ideas of log-linear analysis of contingency table, flexible response function estimation and empirical Bayes dispersion estimation for explorative visualization of microbiome datasets. The package includes unconstrained as well as constrained analysis.
License: GPL-2
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.0
Imports: RColorBrewer, alabama, edgeR, reshape2, tseries, VGAM, ggplot2
        (>= 2.2.1.9000), nleqslv, phyloseq, tensor, MASS, stats,
        grDevices, graphics, methods
Depends: R (>= 3.6.0)
Suggests: knitr, rmarkdown, testthat
VignetteBuilder: knitr
biocViews: Metagenomics, DimensionReduction, Microbiome, Visualization
BugReports: https://github.com/CenterForStatistics-UGent/RCM/issues
URL:
        https://bioconductor.org/packages/release/bioc/vignettes/RCM/inst/doc/RCMvignette.html/
git_url: https://git.bioconductor.org/packages/RCM
git_branch: RELEASE_3_12
git_last_commit: 14befb4
git_last_commit_date: 2020-10-27
Date/Publication: 2020-10-27
NeedsCompilation: no
Packaged: 2020-10-28 02:45:55 UTC; biocbuild
Built: R 4.0.3; ; 2021-03-29 14:21:41 UTC; unix
