{% set version = "1.14.0" %}
{% set name = "quantiseqr" %}
{% set bioc = "3.20" %}

about:
  description: This package provides a streamlined workflow for the quanTIseq method, developed to perform the quantification of the Tumor Immune contexture from RNA-seq data. The quantification is performed against the TIL10 signature (dissecting the contributions of ten immune cell types), carefully crafted from a collection of human RNA-seq samples. The TIL10 signature has been extensively validated using simulated, flow cytometry, and immunohistochemistry data.
  home: https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html
  license: GPL-3
  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
  summary: Quantification of the Tumor Immune contexture from RNA-seq data

build:
  noarch: generic
  number: 0
  rpaths:
    - lib/R/lib/
    - lib/
  run_exports: '{{ pin_subpackage("bioconductor-quantiseqr", max_pin="x.x") }}'

package:
  name: bioconductor-{{ name|lower }}
  version: '{{ version }}'

# Suggests: AnnotationDbi, BiocStyle, dplyr, ExperimentHub, GEOquery, knitr, macrophage, org.Hs.eg.db, reshape2, rmarkdown, testthat, tibble
requirements:
  host:
    - bioconductor-biobase >=2.66.0,<2.67.0
    - bioconductor-preprocesscore >=1.68.0,<1.69.0
    - bioconductor-summarizedexperiment >=1.36.0,<1.37.0
    - r-base
    - r-ggplot2
    - r-limsolve
    - r-mass
    - r-rlang
    - r-tidyr
  run:
    - bioconductor-biobase >=2.66.0,<2.67.0
    - bioconductor-preprocesscore >=1.68.0,<1.69.0
    - bioconductor-summarizedexperiment >=1.36.0,<1.37.0
    - r-base
    - r-ggplot2
    - r-limsolve
    - r-mass
    - r-rlang
    - r-tidyr

source:
  md5: a9551c10906fbb2f456a906cea0ab952
  url:
    - https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz
    - https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz
    - https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz
    - https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz

test:
  commands:
    - $R -e "library('{{ name }}')"

