DEqual                  Differential expression quality (DEqual) plot
covComb_tx_deg          RSE object of RNA-seq data that serves as
                        output for degradation analysis
degradation_tstats      Degradation time t-statistics
getDegTx                Obtain expression matrix for degraded
                        transcripts
getPCs                  PCs from transcripts
get_qsvs                Generate matrix of qsvs
k_qsvs                  Apply num.sv algorithm to determine the number
                        of pcs to be included
qSVA                    A wrapper function used to perform qSVA in one
                        step.
select_transcripts      Select transcripts associated with degradation
transcripts             Transcripts for Degradation Models
