# This file created by conda-build 3.24.0
# meta.yaml template originally from:
# /opt/recipe, last modified Fri Dec 22 12:51:03 2023
# ------------------------------------------------

package:
  name: bioconductor-qsvar
  version: 1.6.0
source:
  md5: e9531cc164f93967a5d5d0469d47f7c7
  url:
    - https://bioarchive.galaxyproject.org/qsvaR_1.6.0.tar.gz
    - https://bioconductor.org/packages/3.18/bioc/src/contrib/Archive/qsvaR/qsvaR_1.6.0.tar.gz
    - https://bioconductor.org/packages/3.18/bioc/src/contrib/qsvaR_1.6.0.tar.gz
    - https://depot.galaxyproject.org/software/bioconductor-qsvar/bioconductor-qsvar_1.6.0_src_all.tar.gz
build:
  noarch: generic
  number: '0'
  rpaths:
    - lib/
    - lib/R/lib/
  run_exports: bioconductor-qsvar >=1.6.0,<1.7.0a0
  string: r43hdfd78af_0
requirements:
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - _r-mutex 1.0.1 anacondar_1
    - argcomplete 3.2.1 pyhd8ed1ab_0
    - binutils_impl_linux-64 2.40 hf600244_0
    - bioconductor-annotate 1.80.0 r43hdfd78af_0
    - bioconductor-annotationdbi 1.64.1 r43hdfd78af_0
    - bioconductor-biobase 2.62.0 r43ha9d7317_1
    - bioconductor-biocgenerics 0.48.1 r43hdfd78af_2
    - bioconductor-biocparallel 1.36.0 r43hf17093f_1
    - bioconductor-biostrings 2.70.1 r43ha9d7317_1
    - bioconductor-data-packages 20231203 hdfd78af_0
    - bioconductor-delayedarray 0.28.0 r43ha9d7317_1
    - bioconductor-edger 4.0.2 r43hf17093f_0
    - bioconductor-genefilter 1.84.0 r43ha1e849b_0
    - bioconductor-genomeinfodb 1.38.1 r43hdfd78af_1
    - bioconductor-genomeinfodbdata 1.2.11 r43hdfd78af_1
    - bioconductor-genomicranges 1.54.1 r43ha9d7317_1
    - bioconductor-iranges 2.36.0 r43ha9d7317_1
    - bioconductor-keggrest 1.42.0 r43hdfd78af_0
    - bioconductor-limma 3.58.1 r43ha9d7317_0
    - bioconductor-matrixgenerics 1.14.0 r43hdfd78af_1
    - bioconductor-s4arrays 1.2.0 r43ha9d7317_1
    - bioconductor-s4vectors 0.40.2 r43ha9d7317_1
    - bioconductor-sparsearray 1.2.2 r43ha9d7317_1
    - bioconductor-summarizedexperiment 1.32.0 r43hdfd78af_0
    - bioconductor-sva 3.50.0 r43ha9d7317_0
    - bioconductor-xvector 0.42.0 r43ha9d7317_1
    - bioconductor-zlibbioc 1.48.0 r43ha9d7317_1
    - bwidget 1.9.14 ha770c72_1
    - bzip2 1.0.8 hd590300_5
    - c-ares 1.24.0 hd590300_0
    - ca-certificates 2023.11.17 hbcca054_0
    - cairo 1.18.0 h3faef2a_0
    - curl 8.5.0 hca28451_0
    - expat 2.5.0 hcb278e6_1
    - font-ttf-dejavu-sans-mono 2.37 hab24e00_0
    - font-ttf-inconsolata 3.000 h77eed37_0
    - font-ttf-source-code-pro 2.038 h77eed37_0
    - font-ttf-ubuntu 0.83 h77eed37_1
    - fontconfig 2.14.2 h14ed4e7_0
    - fonts-conda-ecosystem 1 0
    - fonts-conda-forge 1 0
    - freetype 2.12.1 h267a509_2
    - fribidi 1.0.10 h36c2ea0_0
    - gcc_impl_linux-64 13.2.0 h338b0a0_3
    - gettext 0.21.1 h27087fc_0
    - gfortran_impl_linux-64 13.2.0 h76e1118_3
    - graphite2 1.3.13 h58526e2_1001
    - gxx_impl_linux-64 13.2.0 h338b0a0_3
    - harfbuzz 8.3.0 h3d44ed6_0
    - icu 73.2 h59595ed_0
    - jq 1.7.1 hd590300_0
    - kernel-headers_linux-64 2.6.32 he073ed8_16
    - keyutils 1.6.1 h166bdaf_0
    - krb5 1.21.2 h659d440_0
    - ld_impl_linux-64 2.40 h41732ed_0
    - lerc 4.0.0 h27087fc_0
    - libblas 3.9.0 20_linux64_openblas
    - libcurl 8.5.0 hca28451_0
    - libdeflate 1.19 hd590300_0
    - libedit 3.1.20191231 he28a2e2_2
    - libev 4.33 hd590300_2
    - libexpat 2.5.0 hcb278e6_1
    - libffi 3.4.2 h7f98852_5
    - libgcc-devel_linux-64 13.2.0 ha9c7c90_103
    - libgcc-ng 13.2.0 h807b86a_3
    - libgfortran-ng 13.2.0 h69a702a_3
    - libgfortran5 13.2.0 ha4646dd_3
    - libglib 2.78.3 h783c2da_0
    - libgomp 13.2.0 h807b86a_3
    - libiconv 1.17 hd590300_2
    - libjpeg-turbo 3.0.0 hd590300_1
    - liblapack 3.9.0 20_linux64_openblas
    - libnghttp2 1.58.0 h47da74e_1
    - libnsl 2.0.1 hd590300_0
    - libopenblas 0.3.25 pthreads_h413a1c8_0
    - libpng 1.6.39 h753d276_0
    - libsanitizer 13.2.0 h7e041cc_3
    - libsqlite 3.44.2 h2797004_0
    - libssh2 1.11.0 h0841786_0
    - libstdcxx-devel_linux-64 13.2.0 ha9c7c90_103
    - libstdcxx-ng 13.2.0 h7e041cc_3
    - libtiff 4.6.0 ha9c0a0a_2
    - libuuid 2.38.1 h0b41bf4_0
    - libwebp-base 1.3.2 hd590300_0
    - libxcb 1.15 h0b41bf4_0
    - libxml2 2.11.6 h232c23b_0
    - libzlib 1.2.13 hd590300_5
    - make 4.3 hd18ef5c_1
    - ncurses 6.4 h59595ed_2
    - oniguruma 6.9.9 hd590300_0
    - openssl 3.2.0 hd590300_1
    - pango 1.50.14 ha41ecd1_2
    - pcre2 10.42 hcad00b1_0
    - pip 23.3.2 pyhd8ed1ab_0
    - pixman 0.42.2 h59595ed_0
    - pthread-stubs 0.4 h36c2ea0_1001
    - python 3.12.0 hab00c5b_0_cpython
    - python_abi 3.12 4_cp312
    - pyyaml 6.0.1 py312h98912ed_1
    - r-abind 1.4_5 r43hc72bb7e_1005
    - r-askpass 1.2.0 r43h57805ef_0
    - r-base 4.3.2 hb8ee39d_1
    - r-bh 1.81.0_1 r43hc72bb7e_1
    - r-bit 4.0.5 r43h57805ef_1
    - r-bit64 4.0.5 r43h57805ef_2
    - r-bitops 1.0_7 r43h57805ef_2
    - r-blob 1.2.4 r43hc72bb7e_1
    - r-cachem 1.0.8 r43h57805ef_1
    - r-cli 3.6.2 r43ha503ecb_0
    - r-codetools 0.2_19 r43hc72bb7e_1
    - r-colorspace 2.1_0 r43h57805ef_1
    - r-cpp11 0.4.7 r43hc72bb7e_0
    - r-crayon 1.5.2 r43hc72bb7e_2
    - r-curl 5.1.0 r43hf9611b0_0
    - r-dbi 1.2.0 r43hc72bb7e_0
    - r-ellipsis 0.3.2 r43h57805ef_2
    - r-fansi 1.0.6 r43h57805ef_0
    - r-farver 2.1.1 r43ha503ecb_2
    - r-fastmap 1.1.1 r43ha503ecb_1
    - r-formatr 1.14 r43hc72bb7e_1
    - r-futile.logger 1.4.3 r43hc72bb7e_1005
    - r-futile.options 1.0.1 r43hc72bb7e_1004
    - r-ggplot2 3.4.4 r43hc72bb7e_0
    - r-glue 1.6.2 r43h57805ef_2
    - r-gtable 0.3.4 r43hc72bb7e_0
    - r-httr 1.4.7 r43hc72bb7e_0
    - r-isoband 0.2.7 r43ha503ecb_2
    - r-jsonlite 1.8.8 r43h57805ef_0
    - r-labeling 0.4.3 r43hc72bb7e_0
    - r-lambda.r 1.2.4 r43hc72bb7e_3
    - r-lattice 0.22_5 r43h57805ef_0
    - r-lifecycle 1.0.4 r43hc72bb7e_0
    - r-locfit 1.5_9.8 r43h57805ef_1
    - r-magrittr 2.0.3 r43h57805ef_2
    - r-mass 7.3_60 r43h57805ef_1
    - r-matrix 1.6_4 r43h316c678_0
    - r-matrixstats 1.2.0 r43h57805ef_0
    - r-memoise 2.0.1 r43hc72bb7e_2
    - r-mgcv 1.9_1 r43h316c678_0
    - r-mime 0.12 r43h57805ef_2
    - r-munsell 0.5.0 r43hc72bb7e_1006
    - r-nlme 3.1_164 r43h61816a4_0
    - r-openssl 2.1.1 r43hb353fa6_0
    - r-pillar 1.9.0 r43hc72bb7e_1
    - r-pkgconfig 2.0.3 r43hc72bb7e_3
    - r-plogr 0.2.0 r43hc72bb7e_1005
    - r-png 0.1_8 r43h81d01c5_1
    - r-r6 2.5.1 r43hc72bb7e_2
    - r-rcolorbrewer 1.1_3 r43h785f33e_2
    - r-rcpp 1.0.11 r43h7df8631_0
    - r-rcurl 1.98_1.13 r43hf9611b0_0
    - r-rlang 1.1.2 r43ha503ecb_0
    - r-rsqlite 2.3.4 r43ha503ecb_0
    - r-scales 1.3.0 r43hc72bb7e_0
    - r-snow 0.4_4 r43hc72bb7e_2
    - r-statmod 1.5.0 r43hd8f1df9_1
    - r-survival 3.5_7 r43h57805ef_0
    - r-sys 3.4.2 r43h57805ef_1
    - r-tibble 3.2.1 r43h57805ef_2
    - r-utf8 1.2.4 r43h57805ef_0
    - r-vctrs 0.6.5 r43ha503ecb_0
    - r-viridislite 0.4.2 r43hc72bb7e_1
    - r-withr 2.5.2 r43hc72bb7e_0
    - r-xml 3.99_0.16 r43hc38eee6_0
    - r-xtable 1.8_4 r43hc72bb7e_5
    - readline 8.2 h8228510_1
    - sed 4.8 he412f7d_0
    - setuptools 68.2.2 pyhd8ed1ab_0
    - sysroot_linux-64 2.12 he073ed8_16
    - tk 8.6.13 noxft_h4845f30_101
    - tktable 2.10 h0c5db8f_5
    - toml 0.10.2 pyhd8ed1ab_0
    - tomlkit 0.12.3 pyha770c72_0
    - tzdata 2023d h0c530f3_0
    - wheel 0.42.0 pyhd8ed1ab_0
    - xmltodict 0.13.0 pyhd8ed1ab_0
    - xorg-kbproto 1.0.7 h7f98852_1002
    - xorg-libice 1.1.1 hd590300_0
    - xorg-libsm 1.2.4 h7391055_0
    - xorg-libx11 1.8.7 h8ee46fc_0
    - xorg-libxau 1.0.11 hd590300_0
    - xorg-libxdmcp 1.1.3 h7f98852_0
    - xorg-libxext 1.3.4 h0b41bf4_2
    - xorg-libxrender 0.9.11 hd590300_0
    - xorg-libxt 1.3.0 hd590300_1
    - xorg-renderproto 0.11.1 h7f98852_1002
    - xorg-xextproto 7.3.0 h0b41bf4_1003
    - xorg-xproto 7.0.31 h7f98852_1007
    - xz 5.2.6 h166bdaf_0
    - yaml 0.2.5 h7f98852_2
    - yq 3.2.3 pyhd8ed1ab_0
    - zlib 1.2.13 hd590300_5
    - zstd 1.5.5 hfc55251_0
  run:
    - bioconductor-summarizedexperiment >=1.32.0,<1.33.0
    - bioconductor-sva >=3.50.0,<3.51.0
    - r-base >=4.3,<4.4.0a0
    - r-ggplot2
test:
  commands:
    - $R -e "library('qsvaR')"
about:
  description: The qsvaR package contains functions for removing the effect of degration
    in rna-seq data from postmortem brain tissue. The package is equipped to help
    users generate principal components associated with degradation. The components
    can be used in differential expression analysis to remove the effects of degradation.
  home: https://bioconductor.org/packages/3.18/bioc/html/qsvaR.html
  license: Artistic-2.0
  summary: Generate Quality Surrogate Variable Analysis for Degradation Correction
extra:
  copy_test_source_files: true
  final: true
