# Generate Quality Surrogate Variable Analysis for Degradation Correction

## Documentation for package ‘qsvaR’ version 1.10.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

check_tx_names | Check validity of transcript vectors
covComb_tx_deg | RSE object of RNA-seq data that serves as output for degradation analysis
degradation_tstats | Degradation time t-statistics
DEqual | Differential expression quality (DEqual) plot
getDegTx | Obtain expression matrix for degraded transcripts
getPCs | PCs from transcripts
get_qsvs | Generate matrix of qsvs
k_qsvs | Apply num.sv algorithm to determine the number of pcs to be included
qSVA | A wrapper function used to perform qSVA in one step.
select_transcripts | Select transcripts associated with degradation
transcripts | Transcripts for Degradation Models