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  "summary": "Set of utility functions for viral quasispecies analysis with NGS data. Most functions are equally useful for metagenomic studies. There are three main types: (1) data manipulation and exploration\u2014functions useful for converting reads to haplotypes and frequencies, repairing reads, intersecting strand haplotypes, and visualizing haplotype alignments. (2) diversity indices\u2014functions to compute diversity and entropy, in which incidence, abundance, and functional indices are considered. (3) data simulation\u2014functions useful for generating random viral quasispecies data.",
  "tags": []
}