qPLEXanalyzer-package	qPLEXanalyzer-package
assignColours	assignColours
computeDiffStats	computeDiffStats
convertToMSnset	convertToMSnset
corrPlot	corrPlot
coveragePlot	coveragePlot
ER_ARID1A_KO_MCF7	ER_ARID1A_KO_MCF7
exp2_Xlink	exp2_Xlink
exp3_OHT_ESR1	exp3_OHT_ESR1
getContrastResults	getContrastResults
groupScaling	groupScaling
hierarchicalPlot	hierarchicalPlot
human_anno	human_anno
intensityBoxplot	intensityBoxplot
intensityPlot	intensityPlot
IRSnorm	IRSnorm
maVolPlot	maVolPlot
mergePeptides	mergePeptides
mergeSites	mergeSites
mouse_anno	mouse_anno
normalizeQuantiles	normalizeQuantiles
normalizeScaling	normalizeScaling
pcaPlot	pcaPlot
peptideIntensityPlot	peptideIntensityPlot
plotMeanVar	plotMeanVar
qPLEXanalyzer	qPLEXanalyzer-package
regressIntensity	regressIntensity
rliPlot	rliPlot
rowScaling	rowScaling
summarizeIntensities	summarizeIntensities
