# Index file for the qcmetrics package vignette

Laurent Gatto1

1Computational Proteomics Unit, Cambridge, UK

#### 30 October 2018

#### Abstract

The qcmetrics package is a framework that provides simple data containers for quality metrics and support for automatic report generation. This document briefly illustrates the core data structures and then demonstrates the generation and automation of quality control reports for microarray and proteomics data.

#### Package

qcmetrics 1.20.0

The full vignette is available in pdf format on the qcmetrics Bioconductor landing page at

http://www.bioconductor.org/packages/devel/bioc/vignettes/qcmetrics/inst/doc/qcmetrics.pdf

# 1 Session information

    ## R version 3.5.1 Patched (2018-07-12 r74967)
    ## Platform: x86_64-pc-linux-gnu (64-bit)
    ## Running under: Ubuntu 16.04.5 LTS
    ##
    ## Matrix products: default
    ## BLAS: /home/biocbuild/bbs-3.8-bioc/R/lib/libRblas.so
    ## LAPACK: /home/biocbuild/bbs-3.8-bioc/R/lib/libRlapack.so
    ##
    ## attached base packages:
    ## [1] stats     graphics  grDevices utils     datasets  methods   base
    ##
    ## other attached packages:
    ## [1] BiocStyle_2.10.0
    ##
    ## loaded via a namespace (and not attached):
    ##  [1] Rcpp_0.12.19       bookdown_0.7       digest_0.6.18
    ##  [4] rprojroot_1.3-2    backports_1.1.2    magrittr_1.5
    ##  [7] evaluate_0.12      stringi_1.2.4      rmarkdown_1.10
    ## [10] tools_3.5.1        stringr_1.3.1      xfun_0.4
    ## [13] yaml_2.2.0         compiler_3.5.1     BiocManager_1.30.3
    ## [16] htmltools_0.3.6    knitr_1.20