# Generated by roxygen2: do not edit by hand

export(PFMtoPWM)
export(PWMUnscaled)
export(getBackgroundFrequencies)
export(makeBackground)
export(makePWMCutoffBackground)
export(makePWMEmpiricalBackground)
export(makePWMGEVBackground)
export(makePWMLognBackground)
export(makePWMPvalCutoffBackground)
export(makePWMPvalCutoffBackgroundFromSeq)
export(makePriors)
export(motifDiffEnrichment)
export(motifEcdf)
export(motifEnrichment)
export(motifIC)
export(motifScores)
export(motifSimilarity)
export(plotMotifScores)
export(plotMultipleMotifs)
export(readMotifs)
export(registerCoresPWMEnrich)
export(scanWithPWM)
export(seqLogoGrid)
export(toPWM)
export(useBigMemoryPWMEnrich)
exportClasses(MotifEnrichmentReport)
exportClasses(MotifEnrichmentResults)
exportClasses(PWM)
exportClasses(PWMCutoffBackground)
exportClasses(PWMEmpiricalBackground)
exportClasses(PWMGEVBackground)
exportClasses(PWMLognBackground)
exportMethods(as.data.frame)
exportMethods(groupReport)
exportMethods(motifRankingForGroup)
exportMethods(motifRankingForSequence)
exportMethods(plot)
exportMethods(plotTopMotifsGroup)
exportMethods(plotTopMotifsSequence)
exportMethods(reverseComplement)
exportMethods(sequenceReport)
import(BiocGenerics)
import(Biostrings)
import(grid)
import(methods)
importFrom(S4Vectors,metadata)
importFrom(evd,fgev)
importFrom(evd,pgev)
importFrom(gdata,trim)
importFrom(grDevices,col2rgb)
importFrom(grDevices,palette)
importFrom(grDevices,rgb)
importFrom(graphics,lines)
importFrom(graphics,par)
importFrom(graphics,polygon)
importFrom(graphics,rect)
importFrom(graphics,text)
importFrom(seqLogo,makePWM)
importFrom(seqLogo,plot)
importFrom(stats,cor)
importFrom(stats,dlnorm)
importFrom(stats,ecdf)
importFrom(stats,lm)
importFrom(stats,median)
importFrom(stats,na.omit)
importFrom(stats,optimize)
importFrom(stats,pchisq)
importFrom(stats,plnorm)
importFrom(stats,predict.lm)
importFrom(stats,qlnorm)
importFrom(stats,quantile)
importFrom(utils,data)
