# Generated by roxygen2: do not edit by hand

export("assayNamesPept<-")
export("assayNamesProt<-")
export("assaysPept<-")
export("assaysProt<-")
export("linkerDf<-")
export("metaoptions<-")
export("rowDataPept<-")
export("rowDataProt<-")
export("rownamesPept<-")
export("rownamesProt<-")
export(PeptExp)
export(ProtExp)
export(SilacPeptideExperiment)
export(SilacProteinExperiment)
export(SilacProteomicsExperiment)
export(addMisscleavedPeptides)
export(assayNamesPept)
export(assayNamesProt)
export(assaysPept)
export(assaysProt)
export(barplotCounts)
export(barplotTimeCoverage)
export(buildLinkerDf)
export(calculateAIC)
export(calculateIsotopeFraction)
export(calculateIsotopeRatio)
export(calculateOldIsotopePool)
export(compareAIC)
export(filterByMissingTimepoints)
export(linkerDf)
export(mergeModelsLists)
export(metaoptions)
export(modelTurnover)
export(mostStable)
export(plotDistributionAssay)
export(plotDistributionModel)
export(plotIndividualModel)
export(rowDataPept)
export(rowDataProt)
export(rownamesPept)
export(rownamesProt)
export(scatterCompareAssays)
export(scatterCompareModels)
export(subsetPept)
export(subsetProt)
export(upsetTimeCoverage)
exportClasses(SilacPeptideExperiment)
exportClasses(SilacProteinExperiment)
exportClasses(SilacProteomicsExperiment)
exportMethods("$")
exportMethods("$<-")
exportMethods("[")
exportMethods("assayNamesPept<-")
exportMethods("assayNamesProt<-")
exportMethods("assays<-")
exportMethods("assaysPept<-")
exportMethods("assaysProt<-")
exportMethods("colData<-")
exportMethods("colnames<-")
exportMethods("linkerDf<-")
exportMethods("metadata<-")
exportMethods("metaoptions<-")
exportMethods("rowData<-")
exportMethods("rowDataPept<-")
exportMethods("rowDataProt<-")
exportMethods("rownamesPept<-")
exportMethods("rownamesProt<-")
exportMethods(addMisscleavedPeptides)
exportMethods(assayNames)
exportMethods(assayNamesPept)
exportMethods(assayNamesProt)
exportMethods(assays)
exportMethods(assaysPept)
exportMethods(assaysProt)
exportMethods(barplotCounts)
exportMethods(barplotTimeCoverage)
exportMethods(calculateIsotopeFraction)
exportMethods(calculateIsotopeRatio)
exportMethods(calculateOldIsotopePool)
exportMethods(cbind)
exportMethods(coerce)
exportMethods(colData)
exportMethods(colnames)
exportMethods(dim)
exportMethods(filterByMissingTimepoints)
exportMethods(length)
exportMethods(linkerDf)
exportMethods(merge)
exportMethods(metadata)
exportMethods(metaoptions)
exportMethods(modelTurnover)
exportMethods(mostStable)
exportMethods(ncol)
exportMethods(nrow)
exportMethods(plotDistributionAssay)
exportMethods(plotIndividualModel)
exportMethods(rbind)
exportMethods(rowData)
exportMethods(rowDataPept)
exportMethods(rowDataProt)
exportMethods(rownamesPept)
exportMethods(rownamesProt)
exportMethods(scatterCompareAssays)
exportMethods(subset)
exportMethods(subsetPept)
exportMethods(subsetProt)
exportMethods(upsetTimeCoverage)
import(S4Vectors)
import(SummarizedExperiment)
import(ggplot2)
import(methods)
importClassesFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(MuMIn,AICc)
importFrom(R.utils,insert)
importFrom(S4Vectors,DataFrame)
importFrom(S4Vectors,setValidity2)
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(SummarizedExperiment,colData)
importFrom(UpSetR,fromList)
importFrom(UpSetR,upset)
importFrom(cowplot,plot_grid)
importFrom(ggridges,geom_density_ridges)
importFrom(grid,grid.edit)
importFrom(grid,grid.grab)
importFrom(robustbase,nlrob)
importFrom(stats,AIC)
importFrom(stats,as.formula)
importFrom(stats,coefficients)
importFrom(stats,nls)
importFrom(stats,predict)
importFrom(stats,sigma)
importFrom(taRifx,merge.list)
importFrom(utils,setTxtProgressBar)
importFrom(utils,txtProgressBar)
importMethodsFrom(S4Vectors,metadata)
importMethodsFrom(SummarizedExperiment,show)
