{% set version = "1.4.0" %}
{% set name = "pulsedSilac" %}
{% set bioc = "3.12" %}

package:
  name: 'bioconductor-{{ name|lower }}'
  version: '{{ version }}'
source:
  url:
    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
  md5: 8eab0c7a177572f991cf5b730924bb2d
build:
  number: 1
  rpaths:
    - lib/R/lib/
    - lib/
  noarch: generic
# Suggests: testthat (>= 2.1.0), knitr, rmarkdown, gridExtra
requirements:
  host:
    - 'bioconductor-s4vectors >=0.28.0,<0.29.0'
    - 'bioconductor-summarizedexperiment >=1.20.0,<1.21.0'
    - r-base
    - r-cowplot
    - r-ggplot2
    - r-ggridges
    - r-mumin
    - r-r.utils
    - r-robustbase
    - r-tarifx
    - r-upsetr
  run:
    - 'bioconductor-s4vectors >=0.28.0,<0.29.0'
    - 'bioconductor-summarizedexperiment >=1.20.0,<1.21.0'
    - r-base
    - r-cowplot
    - r-ggplot2
    - r-ggridges
    - r-mumin
    - r-r.utils
    - r-robustbase
    - r-tarifx
    - r-upsetr
test:
  commands:
    - '$R -e "library(''{{ name }}'')"'
about:
  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
  license: GPL-3
  summary: 'Analysis of pulsed-SILAC quantitative proteomics data'
  description: 'This package provides several tools for pulsed-SILAC data analysis. Functions are provided to organize the data, calculate isotope ratios, isotope fractions, model protein turnover, compare turnover models, estimate cell growth and estimate isotope recycling. Several visualization tools are also included to do basic data exploration, quality control, condition comparison, individual model inspection and model comparison.'
  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'

