# This file created by conda-build 3.21.4
# meta.yaml template originally from:
# /opt/recipe, last modified Mon Mar 29 05:50:09 2021
# ------------------------------------------------

package:
  name: bioconductor-pulsedsilac
  version: 1.4.0
source:
  md5: 8eab0c7a177572f991cf5b730924bb2d
  url:
    - https://bioarchive.galaxyproject.org/pulsedSilac_1.4.0.tar.gz
    - https://bioconductor.org/packages/3.12/bioc/src/contrib/pulsedSilac_1.4.0.tar.gz
    - https://depot.galaxyproject.org/software/bioconductor-pulsedsilac/bioconductor-pulsedsilac_1.4.0_src_all.tar.gz
build:
  noarch: generic
  number: '1'
  rpaths:
    - lib/
    - lib/R/lib/
  string: r40hdfd78af_1
requirements:
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 1_gnu
    - _r-mutex 1.0.1 anacondar_1
    - binutils_impl_linux-64 2.35.1 h193b22a_2
    - binutils_linux-64 2.35 h67ddf6f_30
    - bioconductor-biobase 2.50.0 r40hd029910_1
    - bioconductor-biocgenerics 0.36.0 r40hdfd78af_1
    - bioconductor-delayedarray 0.16.3 r40hd029910_0
    - bioconductor-genomeinfodb 1.26.4 r40hdfd78af_0
    - bioconductor-genomeinfodbdata 1.2.4 r40hdfd78af_1
    - bioconductor-genomicranges 1.42.0 r40hd029910_1
    - bioconductor-iranges 2.24.1 r40hd029910_0
    - bioconductor-matrixgenerics 1.2.1 r40hdfd78af_0
    - bioconductor-s4vectors 0.28.1 r40hd029910_0
    - bioconductor-summarizedexperiment 1.20.0 r40hdfd78af_1
    - bioconductor-xvector 0.30.0 r40hd029910_1
    - bioconductor-zlibbioc 1.36.0 r40hd029910_1
    - bwidget 1.9.14 ha770c72_0
    - bzip2 1.0.8 h7f98852_4
    - c-ares 1.17.1 h7f98852_1
    - ca-certificates 2020.12.5 ha878542_0
    - cairo 1.16.0 h6cf1ce9_1008
    - curl 7.75.0 h979ede3_0
    - fontconfig 2.13.1 hba837de_1004
    - freetype 2.10.4 h0708190_1
    - fribidi 1.0.10 h36c2ea0_0
    - gcc_impl_linux-64 9.3.0 h70c0ae5_18
    - gcc_linux-64 9.3.0 hf25ea35_30
    - gettext 0.19.8.1 h0b5b191_1005
    - gfortran_impl_linux-64 9.3.0 hc4a2995_18
    - gfortran_linux-64 9.3.0 hdc58fab_30
    - graphite2 1.3.13 h58526e2_1001
    - gsl 2.6 he838d99_2
    - gxx_impl_linux-64 9.3.0 hd87eabc_18
    - gxx_linux-64 9.3.0 h3fbe746_30
    - harfbuzz 2.8.0 h83ec7ef_1
    - icu 68.1 h58526e2_0
    - jpeg 9d h36c2ea0_0
    - kernel-headers_linux-64 2.6.32 h77966d4_13
    - krb5 1.17.2 h926e7f8_0
    - ld_impl_linux-64 2.35.1 hea4e1c9_2
    - libblas 3.9.0 8_openblas
    - libcblas 3.9.0 8_openblas
    - libcurl 7.75.0 hc4aaa36_0
    - libedit 3.1.20191231 he28a2e2_2
    - libev 4.33 h516909a_1
    - libffi 3.3 h58526e2_2
    - libgcc-devel_linux-64 9.3.0 h7864c58_18
    - libgcc-ng 9.3.0 h2828fa1_18
    - libgfortran-ng 9.3.0 hff62375_18
    - libgfortran5 9.3.0 hff62375_18
    - libglib 2.68.0 h3e27bee_2
    - libgomp 9.3.0 h2828fa1_18
    - libiconv 1.16 h516909a_0
    - liblapack 3.9.0 8_openblas
    - libnghttp2 1.43.0 h812cca2_0
    - libopenblas 0.3.12 pthreads_h4812303_1
    - libpng 1.6.37 h21135ba_2
    - libssh2 1.9.0 ha56f1ee_6
    - libstdcxx-devel_linux-64 9.3.0 hb016644_18
    - libstdcxx-ng 9.3.0 h6de172a_18
    - libtiff 4.2.0 hdc55705_0
    - libuuid 2.32.1 h7f98852_1000
    - libwebp-base 1.2.0 h7f98852_2
    - libxcb 1.13 h7f98852_1003
    - libxml2 2.9.10 h72842e0_3
    - lz4-c 1.9.3 h9c3ff4c_0
    - make 4.3 hd18ef5c_1
    - ncurses 6.2 h58526e2_4
    - openssl 1.1.1k h7f98852_0
    - pango 1.48.4 hb8ff022_0
    - pcre 8.44 he1b5a44_0
    - pcre2 10.36 h032f7d1_1
    - pixman 0.40.0 h36c2ea0_0
    - pthread-stubs 0.4 h36c2ea0_1001
    - r-assertthat 0.2.1 r40h6115d3f_2
    - r-backports 1.2.1 r40hcfec24a_0
    - r-base 4.0.3 h349a78a_8
    - r-bitops 1.0_6 r40hcdcec82_1004
    - r-brio 1.1.1 r40hcfec24a_0
    - r-callr 3.6.0 r40hc72bb7e_0
    - r-cli 2.3.1 r40hc72bb7e_0
    - r-colorspace 2.0_0 r40h9e2df91_0
    - r-cowplot 1.1.1 r40hc72bb7e_0
    - r-crayon 1.4.1 r40hc72bb7e_0
    - r-deoptimr 1.0_8 r40h6115d3f_1003
    - r-desc 1.3.0 r40hc72bb7e_0
    - r-diffobj 0.3.3 r40hcfec24a_0
    - r-digest 0.6.27 r40h1b71b39_0
    - r-ellipsis 0.3.1 r40hcdcec82_0
    - r-evaluate 0.14 r40h6115d3f_2
    - r-fansi 0.4.2 r40hcfec24a_0
    - r-farver 2.1.0 r40h03ef668_0
    - r-ggplot2 3.3.3 r40hc72bb7e_0
    - r-ggridges 0.5.3 r40hc72bb7e_0
    - r-glue 1.4.2 r40hcfec24a_0
    - r-gridextra 2.3 r40h6115d3f_1003
    - r-gtable 0.3.0 r40h6115d3f_3
    - r-isoband 0.2.4 r40h03ef668_0
    - r-jsonlite 1.7.2 r40hcfec24a_0
    - r-labeling 0.4.2 r40h142f84f_0
    - r-lattice 0.20_41 r40hcfec24a_3
    - r-lifecycle 1.0.0 r40hc72bb7e_0
    - r-magrittr 2.0.1 r40hcfec24a_1
    - r-mass 7.3_53.1 r40hcfec24a_0
    - r-matrix 1.3_2 r40he454529_0
    - r-matrixstats 0.58.0 r40hcfec24a_0
    - r-mgcv 1.8_34 r40he454529_0
    - r-mumin 1.43.17 r40h6115d3f_1
    - r-munsell 0.5.0 r40h6115d3f_1003
    - r-nlme 3.1_152 r40h859d828_0
    - r-pillar 1.5.1 r40hc72bb7e_0
    - r-pkgbuild 1.2.0 r40hc72bb7e_0
    - r-pkgconfig 2.0.3 r40h6115d3f_1
    - r-pkgload 1.2.0 r40h03ef668_0
    - r-plyr 1.8.6 r40h0357c0b_1
    - r-praise 1.0.0 r40h6115d3f_1004
    - r-prettyunits 1.1.1 r40h6115d3f_1
    - r-processx 3.5.0 r40hcfec24a_0
    - r-ps 1.6.0 r40hcfec24a_0
    - r-r.methodss3 1.8.1 r40h6115d3f_0
    - r-r.oo 1.24.0 r40h6115d3f_0
    - r-r.utils 2.10.1 r40h6115d3f_0
    - r-r6 2.5.0 r40hc72bb7e_0
    - r-rcolorbrewer 1.1_2 r40h6115d3f_1003
    - r-rcpp 1.0.6 r40h03ef668_0
    - r-rcurl 1.98_1.3 r40hcfec24a_0
    - r-rematch2 2.1.2 r40h6115d3f_1
    - r-reshape2 1.4.4 r40h0357c0b_1
    - r-rlang 0.4.10 r40hcfec24a_0
    - r-robustbase 0.93_7 r40h52d45c5_0
    - r-rprojroot 2.0.2 r40hc72bb7e_0
    - r-rstudioapi 0.13 r40hc72bb7e_0
    - r-scales 1.1.1 r40h6115d3f_0
    - r-stringi 1.5.3 r40hcabe038_1
    - r-stringr 1.4.0 r40h6115d3f_2
    - r-tarifx 1.0.6.2 r40h6115d3f_1
    - r-testthat 3.0.2 r40h03ef668_0
    - r-tibble 3.1.0 r40hcfec24a_1
    - r-upsetr 1.4.0 r40h6115d3f_2
    - r-utf8 1.2.1 r40hcfec24a_0
    - r-vctrs 0.3.6 r40hcfec24a_0
    - r-viridislite 0.3.0 r40h6115d3f_1003
    - r-waldo 0.2.5 r40hc72bb7e_0
    - r-withr 2.4.1 r40hc72bb7e_0
    - r-zeallot 0.1.0 r40h6115d3f_1002
    - readline 8.0 he28a2e2_2
    - sed 4.8 he412f7d_0
    - sysroot_linux-64 2.12 h77966d4_13
    - tk 8.6.10 h21135ba_1
    - tktable 2.10 hb7b940f_3
    - xorg-kbproto 1.0.7 h7f98852_1002
    - xorg-libice 1.0.10 h7f98852_0
    - xorg-libsm 1.2.3 hd9c2040_1000
    - xorg-libx11 1.7.0 h7f98852_0
    - xorg-libxau 1.0.9 h7f98852_0
    - xorg-libxdmcp 1.1.3 h7f98852_0
    - xorg-libxext 1.3.4 h7f98852_1
    - xorg-libxrender 0.9.10 h7f98852_1003
    - xorg-libxt 1.2.1 h7f98852_2
    - xorg-renderproto 0.11.1 h7f98852_1002
    - xorg-xextproto 7.3.0 h7f98852_1002
    - xorg-xproto 7.0.31 h7f98852_1007
    - xz 5.2.5 h516909a_1
    - zlib 1.2.11 h516909a_1010
    - zstd 1.4.9 ha95c52a_0
  run:
    - bioconductor-s4vectors >=0.28.0,<0.29.0
    - bioconductor-summarizedexperiment >=1.20.0,<1.21.0
    - r-base >=4.0,<4.1.0a0
    - r-cowplot
    - r-ggplot2
    - r-ggridges
    - r-mumin
    - r-r.utils
    - r-robustbase
    - r-tarifx
    - r-upsetr
test:
  commands:
    - $R -e "library('pulsedSilac')"
about:
  description: This package provides several tools for pulsed-SILAC data analysis.
    Functions are provided to organize the data, calculate isotope ratios, isotope
    fractions, model protein turnover, compare turnover models, estimate cell growth
    and estimate isotope recycling. Several visualization tools are also included
    to do basic data exploration, quality control, condition comparison, individual
    model inspection and model comparison.
  home: https://bioconductor.org/packages/3.12/bioc/html/pulsedSilac.html
  license: GPL-3
  license_file: /opt/conda/conda-bld/bioconductor-pulsedsilac_1616998575205/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehol/lib/R/share/licenses/GPL-3
  summary: Analysis of pulsed-SILAC quantitative proteomics data
extra:
  copy_test_source_files: true
  final: true
