Package: PubScore
Type: Package
Title: Automatic calculation of literature relevance of genes
Version: 1.2.0
Authors@R: c(person("Tiago", "Lubiana", email = "tiago.lubiana.alves@usp.br",
  role = c("aut", "cre")), person("Helder", "Nakaya", email = "hnkaya@usp.br",
  role = c("aut","ths")))
Description: Calculates the importance score for a given gene. The importance score is the total counts of articles in the pubmed database that are a result for that gene AND each term of a list.
Imports: ggplot2, igraph, ggrepel,rentrez, progress, graphics, dplyr,
        utils, methods, intergraph, network, sna
Suggests: FCBF, plotly, SummarizedExperiment, SingleCellExperiment,
        knitr, rmarkdown, testthat (>= 2.1.0), BiocManager, biomaRt
biocViews: GeneSetEnrichment, GeneExpression, SystemsBiology, Genetics,
        Epigenetics, BiomedicalInformatics, Visualization, SingleCell
VignetteBuilder: knitr
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
Depends: R (>= 4.0.0)
git_url: https://git.bioconductor.org/packages/PubScore
git_branch: RELEASE_3_12
git_last_commit: 45bf079
git_last_commit_date: 2020-10-27
Date/Publication: 2020-11-09
NeedsCompilation: no
Packaged: 2020-11-10 02:58:15 UTC; biocbuild
Author: Tiago Lubiana [aut, cre],
  Helder Nakaya [aut, ths]
Maintainer: Tiago Lubiana <tiago.lubiana.alves@usp.br>
Built: R 4.0.3; ; 2021-03-26 00:28:32 UTC; unix
