# Functions for the projection of weights from PCA, CoGAPS, NMF, correlation, and clustering

## Documentation for package ‘projectR’ version 1.4.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

alluvialMat | alluvialMat
AP.RNAseq6l3c3t | CoGAPS patterns and genes weights for p.RNAseq6l3c3t
aucMat | aucMat
cluster2pattern | Generic cluster2pattern function
cluster2pattern-method | Generic cluster2pattern function
clusterPlotR | Generic clusterPlotR function
clusterPlotR-method | Generic clusterPlotR function
correlateR | correlateR
correlateR-class | correlateR
geneMatchR | Generic geneMatchR function
initialize-method | Constructor for correlateR
initialize-method | Constructor for rotatoR
intersectoR | Generic intersectoR function
intersectoR-method | Generic intersectoR function
map.ESepiGen4c1l | RNAseqing and ChIPSeq of matched genes in differentiated human iPS cells
map.RNAseq6l3c3t | RNAseqing from human 3 iPS & 3 ES cell lines in 3 experimental condition at 3 time points
p.ESepiGen4c1l | RNAseqing and ChIPSeq of matched genes in differentiated human iPS cells
p.RNAseq6l3c3t | RNAseqing from human 3 iPS & 3 ES cell lines in 3 experimental condition at 3 time points
pd.ESepiGen4c1l | RNAseqing and ChIPSeq of matched genes in differentiated human iPS cells
pd.RNAseq6l3c3t | RNAseqing from human 3 iPS & 3 ES cell lines in 3 experimental condition at 3 time points
projectR | Generic projectR function
projectR-method | Generic projectR function
rotatoR | rotatoR
rotatoR-class | rotatoR