TADrandomForest         A wrapper function passed to 'caret::train' to
                        apply a random forest classification algorithm
                        built and tested on user-defined binned domain
                        data from 'createTADdata'.
TADrfe                  A wrapper function passed to 'caret::rfe' to
                        apply recursive feature elimination (RFE) on
                        binned domain data as a feature reduction
                        technique for random forests. Backward
                        elimination is performed from p down to 2, by
                        powers of 2, where p is the number of features
                        in the data.
arrowhead_gm12878_5kb   Domain data from ARROWHEAD TAD-caller for
                        GM12878 at 5 kb
bedToGRangesList        Function to create a GRangesList object from
                        functional genomic annotation data in the form
                        of BED files
binary_func             Helper function used to create binary overlap
                        type feature space
count_func              Helper function used to create count overlap
                        type feature space
createTADdata           Function to create a data matrix used for
                        building a predictive model to classify
                        boundary regions from functional genomic
                        elements
distance_func           Helper function used to create (log2) distance
                        type feature space
extractBoundaries       Function to extract boundaries from domain
                        data.
juicer_func             Helper function for transforming a GRanges
                        object into matrix form to be saved as .txt or
                        .BED file and imported into juicer
percent_func            Helper function used to create percent overlap
                        type feature space
preciseTAD              Precise TAD boundary prediction at base-level
                        resolution using density-based spatial
                        clustering and partitioning techniques
signal_func             Helper function used to create signal type
                        feature space
tfbsList                A list of the chromosomal coordinates for 26
                        transcription factor binding sites from the
                        Gm12878 cell line
