assessSymmetry          A function that calcualtes some directed degree
                        statistics on graphs using a binomial error
                        model
bpMatrix                This function generates the Bait-Prey Matrix
                        for an protein-protein interaction (ppi)
                        experiment
calcInOutDegStats       This function calculates the various degree
                        statistic for a Protein-Protein Interaction
                        (PPI) Graph
createSummaryTables     A function to create summary statistic tables
                        for directed graphs
degreeEstimates         Estimate per-node degree in viable bait-prey
                        (VBP) graph using maximum likelihood.
estErrProbMethodOfMoments
                        Estimate false positive and false negative
                        error probabilities by method moments.
estimateCCMErrorRates   Estimate false positive and false negative
                        error probabilities
estimatePPIErrorRates   Estimate false positive and false negative
                        error probabilities for direct protein
                        interactions
findAdjacent            A function that returns the set of prey
                        detected by a bait in a bait-prey experiment.
genBPGraph              A function to generate the protein-protein
                        interaction (ppi) induced (un)directed graph
idSystematic            A function to identify those proteins affected
                        by either stochastic or systematic errors
idViableProteins        A function to determine viable baits, viable
                        preys, or homodimers within experimental
                        data-sets.
inOutScatterCharts      A function to create scatter plots of the
                        in-degree and out-degree for each vertex of a
                        directed graph
nullDistDoublyTestedEdges
                        Null distribution of number of reciprocated,
                        unreciprocated and missing edges in stochastic
                        model.
ppiBuildParams4GO       A wrapper function to build a parameter class
                        for the input of the HyperGTest.
ppiHGTest4GO            A wrapper function to implement the
                        Hypergeometric test, HyperGTest found withing
                        the Category and GOstats packages.
separateExptBySize      A function to partition experiments in user
                        defined small, medium, large scale experiments
twPERM                  A function to compute a permutation test on a
                        two way table.h
viabilityCharts         A function to create summary bar charts for
                        directed graphs
