# Tools for Omics Data Analysis

## Documentation for package ‘POMA’ version 1.8.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

cor_pmat | Correlation P-Values
flattenCorrMatrix | Flatten Correlation Matrix
PomaBoxplots | Classical Boxplots
PomaClust | Cluster Analysis
PomaCorr | Correlation Analysis
PomaDensity | Distribution Plot
PomaDESeq | Differential expression analysis based on the Negative Binomial distribution
PomaEDA | Automatic Exploratory Data Analysis HTML Report
PomaHeatmap | Classical Heatmap
PomaImpute | Collection of Imputation Methods for Mass Spectrometry Data
PomaLasso | Lasso, Ridge and Elasticnet Regularized Generalized Linear Models for Binary Outcomes
PomaLimma | Easy Implementation of 'limma' Bioconductor Package
PomaMultivariate | Multivariate Statistical Methods for Mass Spectrometry Data
PomaNorm | Collection of Normalization Methods for Mass Spectrometry Data
PomaOddsRatio | Logistic Regression Model Odds Ratios
PomaOutliers | Remove and Analyze Outliers
PomaPCR | Principal Components Regression
PomaRandForest | Classification Random Forest
PomaRankProd | Rank Product/Rank Sum Analysis for Mass Spectrometry Data
PomaSummarizedExperiment | Convert data frames to a SummarizedExperiment Object
PomaUMAP | Dimensionality Reduction with UMAP
PomaUnivariate | Univariate Statistical Methods for Mass Spectrometry Data
PomaVolcano | Volcano Plot
st000284 | Colorectal Cancer Detection Using Targeted Serum Metabolic Profiling
st000336 | Targeted LC/MS of urine from boys with DMD and controls