Package: POMA
Title: Tools for Omics Data Analysis
Version: 1.8.0
Authors@R: 
    c(person(given = "Pol",
             family = "Castellano-Escuder",
             role = c("aut", "cre"),
             email = "polcaes@gmail.com",
             comment = c(ORCID = "0000-0001-6466-877X"))
             )
Description: 
    A reproducible and easy-to-use toolkit for visualization, pre-processing, exploration, 
    and statistical analysis of omics datasets. The main aim of POMA is to enable a flexible data cleaning and 
    statistical analysis processes in one comprehensible and user-friendly R package. This package has a Shiny app 
    version called POMAShiny that implements all POMA functions. See https://github.com/pcastellanoescuder/POMAShiny. 
    See Castellano-Escuder P, González-Domínguez R, Carmona-Pontaque F, et al. (2021) <doi:10.1371/journal.pcbi.1009148> 
    for more details.
License: GPL-3
Encoding: UTF-8
LazyData: true
biocViews: BatchEffect, Classification, Clustering, DecisionTree,
        DimensionReduction, MultidimensionalScaling, Normalization,
        Preprocessing, PrincipalComponent, Regression, RNASeq,
        Software, StatisticalMethod, Visualization
Imports: broom, caret, ComplexHeatmap, dbscan, dplyr, DESeq2, ggplot2,
        ggrepel, glasso (>= 1.11), glmnet, impute, limma, magrittr,
        mixOmics, randomForest, RankProd (>= 3.14), rmarkdown,
        SummarizedExperiment, tibble, tidyr, uwot, vegan
Suggests: BiocStyle, covr, ggraph, knitr, patchwork, plotly, tidyverse,
        testthat (>= 2.3.2)
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.2
Depends: R (>= 4.0)
VignetteBuilder: knitr
URL: https://github.com/pcastellanoescuder/POMA
BugReports: https://github.com/pcastellanoescuder/POMA/issues
git_url: https://git.bioconductor.org/packages/POMA
git_branch: RELEASE_3_16
git_last_commit: 3a1c9c6
git_last_commit_date: 2022-11-01
Date/Publication: 2022-11-01
NeedsCompilation: no
Packaged: 2022-11-01 22:30:26 UTC; biocbuild
Author: Pol Castellano-Escuder [aut, cre]
    (<https://orcid.org/0000-0001-6466-877X>)
Maintainer: Pol Castellano-Escuder <polcaes@gmail.com>
Built: R 4.2.2; ; 2022-11-09 23:10:57 UTC; unix
