Package: POMA
Title: User-friendly Workflow for Pre-processing and Statistical
        Analysis of Mass Spectrometry Data
Version: 1.0.0
Authors@R: 
    c(person(given = "Pol",
             family = "Castellano-Escuder",
             role = c("aut", "cre"),
             email = "polcaes@gmail.com",
             comment = c(ORCID = "0000-0001-6466-877X")),
      person(given = "Raúl",
             family = "González-Domínguez",
             role = "aut",
             email = "raul.gonzalez@ub.edu",
             comment = c(ORCID = "0000-0002-7640-8833")),
      person(given = "Cristina",
             family = "Andrés-Lacueva",
             role = "aut",
             email = "candres@ub.edu",
             comment = c(ORCID = "0000-0002-8494-4978")),
      person(given = "Alex",
             family = "Sánchez-Pla",
             role = "aut",
             email = "asanchez@ub.edu",
             comment = c(ORCID = "0000-0002-8673-7737")))
Description: 
    POMA introduces a structured, reproducible and easy-to-use workflow for the visualization, pre-processing, 
    exploratory and statistical analysis of mass spectrometry data. The main aim of POMA is to enable a flexible 
    data cleaning and statistical analysis processes in one comprehensible and user-friendly R package. This package also 
    has a Shiny app version that implements all POMA functions. See https://github.com/pcastellanoescuder/POMAShiny.
License: GPL-3
Encoding: UTF-8
LazyData: true
biocViews: MassSpectrometry, Metabolomics, Proteomics, Software,
        Visualization, Preprocessing, Normalization, ReportWriting
Imports: Biobase, broom, caret, clisymbols, ComplexHeatmap, crayon,
        dplyr, e1071, ggcorrplot, ggplot2, ggraph, ggrepel, glasso (>=
        1.11), glmnet, impute, knitr, limma, magrittr, mixOmics,
        MSnbase (>= 2.12), patchwork, plotly, qpdf, randomForest,
        RankProd (>= 3.14), reshape2, rmarkdown, tibble, tidyr, vegan
Suggests: BiocStyle, covr, tidyverse, testthat (>= 2.3.2)
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.1
Depends: R (>= 4.0)
VignetteBuilder: knitr
URL: https://github.com/pcastellanoescuder/POMA
BugReports: https://github.com/pcastellanoescuder/POMA/issues
git_url: https://git.bioconductor.org/packages/POMA
git_branch: RELEASE_3_12
git_last_commit: 801ae7b
git_last_commit_date: 2020-10-27
Date/Publication: 2020-10-27
NeedsCompilation: no
Packaged: 2020-10-28 02:29:08 UTC; biocbuild
Author: Pol Castellano-Escuder [aut, cre]
    (<https://orcid.org/0000-0001-6466-877X>),
  Raúl González-Domínguez [aut] (<https://orcid.org/0000-0002-7640-8833>),
  Cristina Andrés-Lacueva [aut] (<https://orcid.org/0000-0002-8494-4978>),
  Alex Sánchez-Pla [aut] (<https://orcid.org/0000-0002-8673-7737>)
Maintainer: Pol Castellano-Escuder <polcaes@gmail.com>
Built: R 4.0.3; ; 2020-11-02 04:25:12 UTC; unix
