# PharmacOGenomics Ontology Support

## Documentation for package ‘pogos’ version 1.12.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

basicDecoder | convert binary output of GET()$content to list
CCLE_drts | compounds_v1: serialization of compounds info from PharmacoDb v1
cell_lines_v1 | compounds_v1: serialization of compounds info from PharmacoDb v1
compoundsByCell | initial version of compound browser over pharmacoDb cells
compounds_v1 | compounds_v1: serialization of compounds info from PharmacoDb v1
datasets_v1 | compounds_v1: serialization of compounds info from PharmacoDb v1
DRProfile-class | DRProfSet is a class for managing dose-response information about cell lines from a pharmacogenomics dataset
DRProfSet | DRProfSet is a class for managing dose-response information about cell lines from a pharmacogenomics dataset
DRProfSet-class | DRProfSet is a class for managing dose-response information about cell lines from a pharmacogenomics dataset
DRTraceSet | DRTraceSet class manages dose-response information for a single cell line, multiple drugs
DRTraceSet-class | DRTraceSet class manages dose-response information for a single cell line, multiple drugs
getDrugs | DRProfSet is a class for managing dose-response information about cell lines from a pharmacogenomics dataset
getDrugs-method | DRProfSet is a class for managing dose-response information about cell lines from a pharmacogenomics dataset
iriCCLE | obtain an example trace set stored locally, for irinotecan and selected cell lines
plot-method | DRProfSet is a class for managing dose-response information about cell lines from a pharmacogenomics dataset
plot-method | DRTraceSet class manages dose-response information for a single cell line, multiple drugs
rxdbQuery_v1 | very simple query formulation, build queries using endpoints of bhklab PharmacoDB API
tissues_v1 | compounds_v1: serialization of compounds info from PharmacoDb v1
topEndpoints_v1 | enumerate top level endpoint terms for bhklab PharmacoDB API
traces | trace extractor
[-method | subscripting on DRProfSet extracts a profile for a single drug whose name constitutes the index