Package: PhosR
Type: Package
Title: A set of methods and tools for comprehensive analysis of
        phosphoproteomics data
Version: 1.0.0
Authors@R: c(
    person("Pengyi", "Yang", email = "pengyi.yang@sydney.edu.au", role = c("aut")),
    person("Taiyun", "Kim", email = "taiyun.kim@sydney.edu.au", role = c("aut", "cre")),
    person("Jieun Hani", "Kim", email = "jieun.kim@sydney.edu.au", role = c("aut"))
    )
Description: PhosR is a package for the comprenhensive analysis of phosphoproteomic data.
    There are two major components to PhosR: processing and downstream analysis.
    PhosR consists of various processing tools for phosphoproteomics data
    including filtering, imputation, normalisation, and functional analysis
    for inferring active kinases and signalling pathways.
License: GPL-3 + file LICENSE
Depends: R (>= 4.0.0)
Imports: ruv, e1071, calibrate, dendextend, limma, pcaMethods, stats,
        RColorBrewer, circlize, dplyr, igraph, pheatmap,
        preprocessCore, tidyr, rlang, graphics, grDevices, utils
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.0
VignetteBuilder: knitr
biocViews: Software, ResearchField, SystemsBiology
Suggests: testthat, knitr, GGally, network, reshape2, ClueR, directPA,
        ggplot2, ggpubr
git_url: https://git.bioconductor.org/packages/PhosR
git_branch: RELEASE_3_12
git_last_commit: 39a78ff
git_last_commit_date: 2020-10-27
Date/Publication: 2020-10-27
NeedsCompilation: no
Packaged: 2020-10-28 02:24:30 UTC; biocbuild
Author: Pengyi Yang [aut],
  Taiyun Kim [aut, cre],
  Jieun Hani Kim [aut]
Maintainer: Taiyun Kim <taiyun.kim@sydney.edu.au>
Built: R 4.0.3; ; 2020-10-30 16:08:30 UTC; unix
