{% set version = "1.38.0" %}
{% set name = "phenoTest" %}
{% set bioc = "3.12" %}

package:
  name: 'bioconductor-{{ name|lower }}'
  version: '{{ version }}'
source:
  url:
    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
  md5: ed1a351558465f190372fb8e000f7cca
build:
  number: 1
  rpaths:
    - lib/R/lib/
    - lib/
  noarch: generic
# Suggests: GSEABase, KEGG.db, GO.db
requirements:
  host:
    - 'bioconductor-annotate >=1.68.0,<1.69.0'
    - 'bioconductor-annotationdbi >=1.52.0,<1.53.0'
    - 'bioconductor-biobase >=2.50.0,<2.51.0'
    - 'bioconductor-biomart >=2.46.0,<2.47.0'
    - 'bioconductor-category >=2.56.0,<2.57.0'
    - 'bioconductor-genefilter >=1.72.0,<1.73.0'
    - 'bioconductor-gseabase >=1.52.0,<1.53.0'
    - 'bioconductor-heatplus >=2.36.0,<2.37.0'
    - 'bioconductor-hgu133a.db >=3.2.0,<3.3.0'
    - 'bioconductor-hopach >=2.50.0,<2.51.0'
    - 'bioconductor-limma >=3.46.0,<3.47.0'
    - r-base
    - r-bma
    - r-ellipse
    - r-ggplot2
    - r-gplots
    - r-hmisc
    - r-mgcv
    - r-survival
    - r-xtable
  run:
    - 'bioconductor-annotate >=1.68.0,<1.69.0'
    - 'bioconductor-annotationdbi >=1.52.0,<1.53.0'
    - 'bioconductor-biobase >=2.50.0,<2.51.0'
    - 'bioconductor-biomart >=2.46.0,<2.47.0'
    - 'bioconductor-category >=2.56.0,<2.57.0'
    - 'bioconductor-genefilter >=1.72.0,<1.73.0'
    - 'bioconductor-gseabase >=1.52.0,<1.53.0'
    - 'bioconductor-heatplus >=2.36.0,<2.37.0'
    - 'bioconductor-hgu133a.db >=3.2.0,<3.3.0'
    - 'bioconductor-hopach >=2.50.0,<2.51.0'
    - 'bioconductor-limma >=3.46.0,<3.47.0'
    - r-base
    - r-bma
    - r-ellipse
    - r-ggplot2
    - r-gplots
    - r-hmisc
    - r-mgcv
    - r-survival
    - r-xtable
test:
  commands:
    - '$R -e "library(''{{ name }}'')"'
about:
  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
  license: 'GPL (>=2)'
  summary: 'Tools to test association between gene expression and phenotype in a way that is efficient, structured, fast and scalable. We also provide tools to do GSEA (Gene set enrichment analysis) and copy number variation.'
  description: 'Tools to test correlation between gene expression and phenotype in a way that is efficient, structured, fast and scalable. GSEA is also provided.'
  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'

