Package: phantasus
Title: Visual and interactive gene expression analysis
Version: 1.22.2
Authors@R: c(person("Daria", "Zenkova", email = "daria.zenkova.cs@gmail.com", role = "aut"),
             person("Vladislav", "Kamenev", role = "aut"),        
             person("Rita", "Sablina", role = "ctb"),        
             person("Maxim", "Kleverov", role = "ctb"),        
             person("Maxim", "Artyomov", role = "aut"),
             person("Alexey", "Sergushichev", email = "alsergbox@gmail.com", role = c("aut", "cre")))
Description: 
    Phantasus is a web-application for visual and interactive gene expression analysis.
    Phantasus is based on Morpheus – a web-based software for heatmap visualisation 
    and analysis, which was integrated with an R environment via OpenCPU API.
    Aside from basic visualization and filtering methods, R-based methods such 
    as k-means clustering, principal component analysis or differential expression analysis
    with limma package are supported.
URL: https://genome.ifmo.ru/phantasus,
        https://artyomovlab.wustl.edu/phantasus
BugReports: https://github.com/ctlab/phantasus/issues
Depends: R (>= 3.5)
biocViews: GeneExpression, GUI, Visualization, DataRepresentation,
        Transcriptomics, RNASeq, Microarray, Normalization, Clustering,
        DifferentialExpression, PrincipalComponent, ImmunoOncology
Imports: ggplot2, protolite, Biobase, GEOquery, Rook, htmltools,
        httpuv, jsonlite, limma, edgeR, opencpu, assertthat, methods,
        httr, rhdf5, utils, parallel, stringr, fgsea (>= 1.9.4),
        svglite, gtable, stats, Matrix, pheatmap, scales, ccaPP, grid,
        grDevices, AnnotationDbi, DESeq2, data.table, curl
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.3
Suggests: testthat, BiocStyle, knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
git_url: https://git.bioconductor.org/packages/phantasus
git_branch: RELEASE_3_18
git_last_commit: 64188e7
git_last_commit_date: 2023-11-15
Date/Publication: 2023-11-16
Packaged: 2023-11-16 23:07:16 UTC; biocbuild
Author: Daria Zenkova [aut],
  Vladislav Kamenev [aut],
  Rita Sablina [ctb],
  Maxim Kleverov [ctb],
  Maxim Artyomov [aut],
  Alexey Sergushichev [aut, cre]
Maintainer: Alexey Sergushichev <alsergbox@gmail.com>
Built: R 4.3.2; ; 2023-12-16 03:53:50 UTC; unix
