Package: paxtoolsr
Type: Package
Title: PaxtoolsR: Access Pathways from Multiple Databases through
        BioPAX and Pathway Commons
Version: 1.24.0
Date: 2020-09-01
Author: Augustin Luna
Maintainer: Augustin Luna <lunaa@cbio.mskcc.org>
Imports: utils, httr, igraph, plyr, rjson, R.utils, jsonlite, readr
Depends: R (>= 3.2), rJava (>= 0.9-8), methods, XML
Suggests: testthat, knitr, BiocStyle, rmarkdown, RColorBrewer, foreach,
        doSNOW, parallel, org.Hs.eg.db, clusterProfiler
SystemRequirements: Java (>= 1.6)
License: LGPL-3
Description: The package provides a set of R functions for interacting with
    BioPAX OWL files using Paxtools and the querying Pathway Commons (PC) molecular
    interaction database that are hosted by the Computational Biology Center at
    Memorial Sloan-Kettering Cancer Center (MSKCC). Pathway Commons databases
    include: BIND, BioGRID, CORUM, CTD, DIP, DrugBank, HPRD, HumanCyc, IntAct, KEGG,
    MirTarBase, Panther, PhosphoSitePlus, Reactome, RECON, TRANSFAC.
VignetteBuilder: knitr
LazyData: true
biocViews: GeneSetEnrichment, GraphAndNetwork, Pathways, Software,
        SystemsBiology, NetworkEnrichment, Network, Reactome, KEGG
URL: https://github.com/BioPAX/paxtoolsr
Encoding: UTF-8
RoxygenNote: 7.0.2
git_url: https://git.bioconductor.org/packages/paxtoolsr
git_branch: RELEASE_3_12
git_last_commit: 24770ee
git_last_commit_date: 2020-10-27
Date/Publication: 2020-10-27
NeedsCompilation: no
Packaged: 2020-10-28 02:14:38 UTC; biocbuild
Built: R 4.0.3; ; 2020-10-29 12:03:39 UTC; unix
