Package: PAST
Type: Package
Title: Pathway Association Study Tool (PAST)
Version: 1.14.0
Authors@R: c(person("Thrash", "Adam", email = "thrash@igbb.msstate.edu",
    role = c("cre", "aut")), person("DeOrnellis", "Mason", role = c("aut")))
Description: PAST takes GWAS output and assigns SNPs to genes, uses those genes
    to find pathways associated with the genes, and plots pathways based on
    significance. Implements methods for reading GWAS input data, finding genes
    associated with SNPs, calculating enrichment score and significance of 
    pathways, and plotting pathways.
License: GPL (>=3) + file LICENSE
Encoding: UTF-8
Depends: R (>= 4.0)
Imports: stats, utils, dplyr, rlang, iterators, parallel, foreach,
        doParallel, qvalue, rtracklayer, ggplot2, GenomicRanges,
        S4Vectors
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
RoxygenNote: 7.1.0
URL: https://github.com/IGBB/past
BugReports: https://github.com/IGBB/past/issues
biocViews: Pathways, GeneSetEnrichment
git_url: https://git.bioconductor.org/packages/PAST
git_branch: RELEASE_3_16
git_last_commit: 63b4808
git_last_commit_date: 2022-11-01
Date/Publication: 2022-11-01
NeedsCompilation: no
Packaged: 2022-11-01 22:27:01 UTC; biocbuild
Author: Thrash Adam [cre, aut],
  DeOrnellis Mason [aut]
Maintainer: Thrash Adam <thrash@igbb.msstate.edu>
Built: R 4.2.2; ; 2022-11-06 23:23:18 UTC; unix
