# Infer locally aneuploid cells using single cell RNA-seq data

## Documentation for package ‘partCNV’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

GetCytoLocation | Get exact location of the interested cytogenetics feature
GetExprCountCyto | Get normalized gene expression counts for selected genes
Hg38_gtf | GTF data for Hg38 genome
NormalizeCounts | Extract and normalize gene expression counts for a SingleCellExperiment object
partCNV | Infer cells that are locally aneuploid using partCNV
partCNVH | Infer cells that are locally aneuploid using partCNVH
SimData | Simulation data to examplify the usage of the method
SimDataSce | Simulation SingleCellExperiment object to examplify the usage of the method